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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • vacuole 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG93519
KRG96023
KRH05968
KRH08858
KRH11151
KRH17450
KRH18485
KRH19897
KRH21096
KRH32507
KRH38373
KRH67730

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G21640.1 KRH05968 AT1G27940.1 14517332
AT3G21640.1 KRH17450 AT1G27940.1 14517332
AT3G21640.1 KRH11151 AT2G34660.1 15133126
AT3G21640.1 KRH21096 AT2G34660.1 15133126
AT3G21640.1 KRG96023 AT2G36910.1 14517332
AT3G21640.1 KRH19897 AT2G36910.1 14517332
AT3G21640.1 KRH32507 AT2G36910.1 14517332
AT3G21640.1 KRH67730 AT2G36910.1 14517332
AT3G21640.1 KRG93519 AT3G28860.1 14517332
AT3G21640.1 KRH18485 AT3G28860.1 14517332
AT3G21640.1 KRH08858 AT5G52640.1 12410806
AT3G21640.1 KRH38373 AT5G52640.1 12410806
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH23877 Soybean cytosol, endoplasmic reticulum, nucleus 96.22 96.22
VIT_13s0064g00580.t01 Wine grape cytosol 80.27 81.37
CDY34049 Canola cytosol 21.89 80.2
PGSC0003DMT400017681 Potato cytosol 75.41 75.82
Solyc01g087470.2.1 Tomato cytosol 65.95 75.08
AT3G21640.1 Thale cress cytosol 71.89 72.88
Bra012823.1-P Field mustard cytosol 70.0 72.55
CDY29061 Canola cytosol 70.0 72.55
Bra006895.1-P Field mustard cytosol 71.08 72.05
GSMUA_Achr6P12690_001 Banana cytosol 72.7 71.93
CDX78057 Canola cytosol 68.38 71.47
CDX73664 Canola cytosol 71.62 71.05
EES07974 Sorghum cytosol 69.19 69.57
Os12t0145500-01 Rice cytosol 69.19 69.19
CDX90622 Canola cytosol 72.7 68.1
Zm00001d004930_P001 Maize mitochondrion 68.38 67.65
Os11t0148300-01 Rice cytosol 67.03 66.13
TraesCS5A01G134500.3 Wheat cytosol 65.95 66.12
TraesCS5D01G139000.1 Wheat cytosol 65.95 65.95
TraesCS5B01G131200.1 Wheat cytosol 65.95 65.95
CDY64639 Canola endoplasmic reticulum, extracellular 47.3 65.3
HORVU5Hr1G041060.1 Barley cytosol, plastid 65.68 57.18
KRG95045 Soybean cytosol 10.0 26.81
KRH21780 Soybean cytosol, mitochondrion, plastid 7.84 25.89
KRH10589 Soybean cytosol 7.57 20.0
KRH30990 Soybean cytosol 9.73 19.15
KRG97894 Soybean cytosol 9.73 19.15
KRH42713 Soybean cytosol 28.65 18.6
KRH58815 Soybean peroxisome 28.65 18.6
KRH07424 Soybean cytosol 27.3 17.6
KRH46622 Soybean cytosol, nucleus 25.41 17.28
KRH66151 Soybean nucleus 26.76 17.01
KRG99620 Soybean cytosol 24.86 16.91
KRH66687 Soybean cytosol 24.05 16.48
KRH75755 Soybean cytosol, endoplasmic reticulum 24.59 14.63
KRH62430 Soybean cytosol 24.59 14.63
KRG88759 Soybean cytosol 21.89 13.92
KRH05556 Soybean cytosol 21.62 13.72
Protein Annotations
Gene3D:1.25.40.10EntrezGene:100813374MapMan:18.12.2Gene3D:3.10.50.40UniProt:A0A0R0II00EMBL:ACUP02006012
EnsemblPlantsGene:GLYMA_09G228200GO:GO:0000413GO:GO:0003674GO:GO:0003755GO:GO:0003824GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0016853GO:GO:0019538InterPro:IPR001179InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734ProteinID:KRH39923.1EnsemblPlants:KRH39924ProteinID:KRH39924ProteinID:KRH39924.1
PFAM:PF00254PFAM:PF13181InterPro:PPIase_FKBPInterPro:PPIase_FKBP_domPFscan:PS50005PFscan:PS50059
PFscan:PS50293PANTHER:PTHR43811PANTHER:PTHR43811:SF21SMART:SM00028SUPFAM:SSF48452SUPFAM:SSF54534
TMHMM:TMhelixInterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sfInterPro:TPR_repeatUniParc:UPI0001D1641ESEG:seg
Description
hypothetical protein
Coordinates
chr9:-:45248270..45251764
Molecular Weight (calculated)
42238.4 Da
IEP (calculated)
5.775
GRAVY (calculated)
-0.624
Length
370 amino acids
Sequence
(BLAST)
001: MEELQGSQTQ SSLGQEDENE VITESSAFVK GEPAPEFSSN PPKVDSEVEV LHEKVTKQII KEGHGQKPSK YSTCFFHYRA WAEKSEHKFE DTWLEQRPIE
101: MVLGKEKKEM TGLSVGVASM KAGERALVRV GWELGYGEEG SFSFPNVPPK ADLVYEVELI GFDETKEGKA RSDMTVEERI GAADRRKMDG NALYQEEKLE
201: EAMQQYEMAI AYMGDDFMFQ LFGKYRDMAL AVKNPCHLNM AACLIKLNRY EEAIGQCNTV LGEDENNVKA LFRRGKARAT LGQTDAARED FLKATKYAPQ
301: DKAIAKELRL LAEHDKAVYQ KQKEIYKGIF GPRPQPVPKP RNWLILIWQW LLSVFYGLVT LFKRERHKSD
Best Arabidopsis Sequence Match ( AT3G21640.1 )
(BLAST)
001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD
Arabidopsis Description
FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.