CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
peroxisome 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07424	Soybean	cytosol	92.96	94.25
KRH46622	Soybean	cytosol, nucleus	79.73	85.29
KRG99620	Soybean	cytosol	78.87	84.38
VIT_00s0958g00020.t01	Wine grape	cytosol, peroxisome	48.97	83.33
KRH58815	Soybean	peroxisome	74.23	75.79
KRH42713	Soybean	cytosol	73.88	75.44
PGSC0003DMT400080935	Potato	cytosol	74.06	74.31
Solyc09g092690.2.1	Tomato	cytosol	73.2	73.32
KRH66687	Soybean	cytosol	50.17	54.07
KRG88759	Soybean	cytosol	48.63	48.63
KRH05556	Soybean	cytosol	48.11	48.03
KRG95045	Soybean	cytosol	11.34	47.83
KRH21780	Soybean	cytosol, mitochondrion, plastid	7.9	41.07
KRG97894	Soybean	cytosol	11.0	34.04
KRH30990	Soybean	cytosol	11.0	34.04
Os01t0562400-01	Rice	mitochondrion	33.68	34.03
KRH10589	Soybean	cytosol	7.9	32.86
Os01t0563000-04	Rice	plasma membrane	35.4	31.6
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	17.18	27.03
KRH62430	Soybean	cytosol	28.87	27.01
KRH75755	Soybean	cytosol, endoplasmic reticulum	28.69	26.85
KRH39924	Soybean	endoplasmic reticulum	17.01	26.76
Os01t0564300-01	Rice	cytosol, plasma membrane	18.21	25.12

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100794411	MapMan:18.12.2	Gene3D:3.10.50.40	Gene3D:3.30.1670.20	UniProt:A0A0R0KGG4
EMBL:ACUP02001910	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G086200	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	EnsemblPlants:KRH66151	ProteinID:KRH66151	ProteinID:KRH66151.1	PFAM:PF00254	PFAM:PF00515
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516
PANTHER:PTHR10516:SF386	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0001B837A8	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:25505813..25511331

Molecular Weight (calculated)

64712.9 Da

IEP (calculated)

4.843

GRAVY (calculated)

-0.599

Length

582 amino acids

Sequence
(BLAST)

001: MDEDFDMPTA EAMGEDFDFA GATGGDLDGS SSNPILKVGE EKEIGKEGLK KKLLKEGEGW DTPEVGDEVQ VHYTGTLLDG TKFDSSRDRG TPFSFTLGQG
101: QVIKGWDQGI ITMKKGENSL FTIPAELAYG ETGSPPTIPP NATLQFDVEL LSWTSVKDIC KDGGLFKKIL TKGEKWENPK DPDEVLVKYE ACLEDGTLVA
201: KSDGVEFTVN DGYFCPALSK AVKTMKKGEK VLLTVKPQYG FGEKGKPAHD EEGAVPPNAT LQITLELVSW KTVSEVTEDK KIIKKILKEG EGYERPNEGA
301: IVKLKVIGKL QDGTLFLKKG HDDEGELFEF KTDEEQVIDG LDRAVLTMKK GEIALLIIGP EYAFGSSESQ LELAVVPPNS TVYYEVELVS FEKEKESWDM
401: DTPEKIEAAG KKKEEGNALF KAGKYARASK RYEKAVKFIE YDTAFSEEEK KSSKALKVAC NLNNAACKLK LKDYKQAEKL CTKVLDLEST NVKALYRRAQ
501: AYIQLADLDL AEFDIKKALE IDPNNRDVKL EYKTLKEKMK EYNKKEAKFY GNMFNKLHKL DSLDSNKPAS KDAQPMNIDS KA

Best Arabidopsis Sequence Match ( AT3G25230.1 )
(BLAST)

001: MDANFEMPPV GGMNDDDDMD FGDGASFLKV GEEKEIQQGL KKKLLKEGEG YETPENGDEV EVHYTGTLLD GTKFDSSRDR ATPFKFTLGQ GQVIKGWDIG
101: IKTMKKGENA VFTIPAELAY GESGSPPTIP ANATLQFDVE LLKWDSVKDI CKDGGVFKKI LAVGEKWENP KDLDEVLVKF EAKLEDGTVV GKSDGVEFTV
201: KDGHFCPALT KAVKTMKKGE KVLLTVKPQY GFGEKGKPAS AGEGAVPPNA TLEINLELVS WKTVSEVTDD NKVVKKVLKE GDGYERPNEG AVVKVKLIGK
301: LQDGTVFLKK GHGENEEPFE FKTDEEQVVD GLDRAVMKMK KGEVALVTID PEYAFGSNES QQELAVVPPN STVTYEVDLL TFDKERESWD MNTEEKIEAA
401: SKKKEEGNSK FKGGKYSLAS KRYEKAVKFI EYDTSFSEEE KKQAKALKVA CNLNDAACKL KLKDYKQAEK LCTKVLELES TNVKALYRRA QAYMELSDLD
501: LAEFDVKKAL EIDPNNREVK LEQKRLKEKM KEFNKKEAKF YGNMFAKLSK E

Arabidopsis Description

ROF1Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:B3H746]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.