CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, endoplasmic reticulum

Predictor Summary:

cytosol 4
plasma membrane 1
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH22653
KRH26664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54010.1	KRH22653	AT5G22290.1	16803883
AT3G54010.1	KRH26664	AT5G22290.1	16803883

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62430	Soybean	cytosol	96.78	96.78
VIT_08s0007g01460.t01	Wine grape	nucleus	77.33	77.58
Solyc11g011420.1.1	Tomato	cytosol, plastid	69.45	73.97
CDX76177	Canola	cytosol	70.58	69.35
TraesCS1B01G192700.1	Wheat	cytosol, mitochondrion	67.2	68.86
AT3G54010.1	Thale cress	cytosol	70.1	68.66
TraesCS1D01G192100.3	Wheat	cytosol	68.81	68.59
Bra014849.1-P	Field mustard	cytosol	70.58	68.38
TraesCS1A01G184600.1	Wheat	cytosol	68.49	68.27
CDY07563	Canola	cytosol	69.94	67.76
CDY13167	Canola	cytosol	69.77	67.6
Bra003166.1-P	Field mustard	cytosol	70.1	67.49
Os03t0367000-01	Rice	plasma membrane	68.33	67.25
CDX67584	Canola	cytosol	69.61	66.72
EER94808	Sorghum	cytosol	67.36	66.51
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	66.08	65.87
Zm00001d047426_P003	Maize	cytosol	67.52	64.02
HORVU4Hr1G042800.9	Barley	cytosol	63.34	59.34
KRH21780	Soybean	cytosol, mitochondrion, plastid	5.47	30.36
KRH42713	Soybean	cytosol	27.81	30.35
KRH58815	Soybean	peroxisome	27.65	30.18
KRG95045	Soybean	cytosol	6.59	29.71
KRH46622	Soybean	cytosol, nucleus	25.72	29.41
KRH66687	Soybean	cytosol	25.4	29.26
KRH07424	Soybean	cytosol	26.85	29.09
KRG99620	Soybean	cytosol	25.4	29.04
KRH66151	Soybean	nucleus	26.85	28.69
KRG88759	Soybean	cytosol	25.88	27.66
KRH05556	Soybean	cytosol	25.4	27.1
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	14.79	24.86
KRH39924	Soybean	endoplasmic reticulum	14.63	24.59
KRH10589	Soybean	cytosol	5.31	23.57
KRG97894	Soybean	cytosol	6.27	20.74
KRH30990	Soybean	cytosol	6.11	20.21

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100527937	MapMan:18.12.2	Gene3D:3.10.50.40	EMBL:ACUP02000481	ncoils:Coil
EnsemblPlantsGene:GLYMA_01G106600	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005528	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0030154	GO:GO:0042761	GO:GO:0061077
GO:GO:0099402	UniProt:I1J730	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRH75755	ProteinID:KRH75755	ProteinID:KRH75755.1	InterPro:PAS1	PFAM:PF00254	PFAM:PF13181
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516
PANTHER:PTHR10516:SF268	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI00023BE09D	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:36200069..36210433

Molecular Weight (calculated)

69967.6 Da

IEP (calculated)

5.254

GRAVY (calculated)

-0.517

Length

622 amino acids

Sequence
(BLAST)

001: MAANEDAAHE FAPKKKPPSE DEKRKKKIVP GSLMKALMRP GGGDAGPSDG DQIIYHCTIR TLDGVLVEST RSDYGGKGIP IRHVLGKSKM LLGLLEGIPS
101: MLKGEVAMFK MKPQLHYGED DCPVSAPDGF PKDDDLHFEI ELIEFFKAKV VTDDLGVVKK VVREGQGWES PREPYEVKAW ISAKTVTGKL IMSHTEGEPY
201: FFTFGKSEVP KGLEMAIGTM VREEKAVIYV TSQYLTESPL MPVIEGYDEV HFEVELVHFI QVRDMLGDGR LIKCRIHDGK GDFPMDCPLH DSLLRVHYKG
301: TVLNEEKRVF YDTRVDNDGQ PLEFYSGEGL VPEGFEMSVR LMLPGEIALV TCPPDYAYDK FPRPVNVPEG AHIQWEIELL GFETPKDWTG LDFKSIMNEA
401: ENIRNTGNRL FKEGKYELAK AKYEKVLREF NHVNPQDDEE GKFFADTRNL LHLNVAACHL KLGECRKSIE TCNKVLEANP AHVKGLYRRG MAYMAAGDFE
501: EARADFKMMM KVDTSTESDA TAALQKLKQK EQDVEKKARK QFKGLFDKKP GEIAEAKADV DGDLITSEIQ KDDEVHGDSD GTNSEDSHEA PPEAQRTGWF
601: SLFWPSGRRL FESLGINRCT IL

Best Arabidopsis Sequence Match ( AT3G54010.1 )
(BLAST)

001: MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT

Arabidopsis Description

PAS1Peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Source:UniProtKB/Swiss-Prot;Acc:Q7DMA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.