Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54010.1 | CDX70995 | AT5G22290.1 | 16803883 |
| AT3G54010.1 | CDX88803 | AT5G22290.1 | 16803883 |
| AT3G54010.1 | CDX92368 | AT5G22290.1 | 16803883 |
| AT3G54010.1 | CDY09128 | AT5G22290.1 | 16803883 |
| AT3G54010.1 | CDY35676 | AT5G22290.1 | 16803883 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014849.1-P | Field mustard | cytosol | 99.37 | 97.98 |
| CDY13167 | Canola | cytosol | 94.63 | 93.3 |
| CDX67584 | Canola | cytosol | 91.63 | 89.37 |
| CDY07563 | Canola | cytosol | 90.52 | 89.25 |
| AT3G54010.1 | Thale cress | cytosol | 89.1 | 88.82 |
| KRH62430 | Soybean | cytosol | 69.98 | 71.22 |
| VIT_08s0007g01460.t01 | Wine grape | nucleus | 69.67 | 71.13 |
| KRH75755 | Soybean | cytosol, endoplasmic reticulum | 69.35 | 70.58 |
| Solyc11g011420.1.1 | Tomato | cytosol, plastid | 64.61 | 70.03 |
| TraesCS1B01G192700.1 | Wheat | cytosol, mitochondrion | 62.72 | 65.4 |
| TraesCS1D01G192100.3 | Wheat | cytosol | 64.3 | 65.22 |
| TraesCS1A01G184600.1 | Wheat | cytosol | 64.14 | 65.06 |
| Os03t0367000-01 | Rice | plasma membrane | 64.45 | 64.56 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion, nucleus | 63.03 | 63.94 |
| EER94808 | Sorghum | cytosol | 63.35 | 63.65 |
| Zm00001d047426_P003 | Maize | cytosol | 63.67 | 61.43 |
| HORVU4Hr1G042800.9 | Barley | cytosol | 61.77 | 58.89 |
| CDY46798 | Canola | cytosol | 3.63 | 31.08 |
| CDY34049 | Canola | cytosol | 4.9 | 30.69 |
| CDY15104 | Canola | cytosol | 13.11 | 29.96 |
| CDY15103 | Canola | cytosol | 26.07 | 29.57 |
| CDY52281 | Canola | cytosol | 26.07 | 29.57 |
| CDY58272 | Canola | cytosol, mitochondrion, plastid | 5.21 | 29.46 |
| CDX84517 | Canola | cytosol, mitochondrion, plastid | 5.21 | 29.46 |
| CDX85348 | Canola | cytosol | 26.07 | 28.95 |
| CDX86295 | Canola | cytosol | 25.59 | 28.27 |
| CDX81222 | Canola | cytosol, mitochondrion, plastid | 4.9 | 27.68 |
| CDY18714 | Canola | endoplasmic reticulum, extracellular | 5.21 | 25.58 |
| CDY41214 | Canola | nucleus | 7.11 | 23.68 |
| CDY40236 | Canola | nucleus | 6.95 | 23.16 |
| CDY00831 | Canola | cytosol | 6.64 | 22.11 |
| CDX73664 | Canola | cytosol | 12.32 | 20.91 |
| CDX78057 | Canola | cytosol | 11.69 | 20.9 |
| CDY64639 | Canola | endoplasmic reticulum, extracellular | 8.85 | 20.9 |
| CDY29061 | Canola | cytosol | 11.69 | 20.73 |
| CDY31323 | Canola | extracellular | 4.27 | 20.45 |
| CDX90622 | Canola | cytosol | 12.48 | 20.0 |
| CDY00829 | Canola | cytosol | 10.27 | 18.21 |
| CDY02979 | Canola | mitochondrion | 3.0 | 16.1 |
| CDY15096 | Canola | cytosol | 17.69 | 15.89 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:18.12.2 | Gene3D:3.10.50.40 | GO:A0A078CHF6 | EnsemblPlants:CDX76177 | ProteinID:CDX76177 |
| ProteinID:CDX76177.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006629 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0042761 | GO:GO:0048513 | GO:GO:0099402 | EnsemblPlantsGene:GSBRNA2T00126480001 | InterPro:IPR001179 | InterPro:IPR011990 |
| InterPro:IPR013026 | InterPro:IPR019734 | InterPro:PAS1 | PFAM:PF00254 | PFAM:PF13174 | InterPro:PPIase_FKBP |
| InterPro:PPIase_FKBP_dom | PFscan:PS50005 | PFscan:PS50059 | PFscan:PS50293 | PANTHER:PTHR10516 | PANTHER:PTHR10516:SF268 |
| SMART:SM00028 | SUPFAM:SSF48452 | SUPFAM:SSF54534 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| UniParc:UPI0004EE4FC3 | SEG:seg | : | : | : | : |
Description
BnaA04g04410D
Coordinates
chrLK031806:-:1614970..1619323
Molecular Weight (calculated)
72021.4 Da
IEP (calculated)
6.010
GRAVY (calculated)
-0.600
Length
633 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAEQNHLP KKKKSETEDD KSRRKKIVPG RLLKALVRPG GGESSPVDGD QVIYHCTVRT LDGVVVESTR SECGGRGLPI RDVLGKSKMI LGLLEGIPTM
101: HKGEIAMFKM KPEMHYAEKD CPVLAPGNFP KDDELHFEIE LLDFAKAKAI SHHELLRYSI ASDDLGVIKK ILNEGEGWES PREPYEVKAR ISAISGDGKV
201: ILSHKEEPYF FTFGKSEVPK GLEIGIGTMA RKEKAVIYVR KQYLTESPLM HIAQDFEEVH FEVELVHFIQ VRDMLGDGRL IKRRVRDGRG EFPMDCPLQD
301: SRLSVHYKGM LLNEEKTVFY DSRIENNDHP LEFSSGEGLV PEGFEMCTRL MLPGEIALVT CPPDYAYDKF PRPPGVPEGA HVQWEIELLG FETPKDWTGL
401: DFQSIMNEAE NIRNTGNRLF KEGKFELAKA KYEKVLREFN HVNPQDDEEG KVFGDARNML HLNVAACLLK MGEWRKSLET CNKVLEAKPG HVKGLYRRGM
501: AYMAGGEYED ARNDFNMMIK VDKSSEADAT AALFKLKQKE QEAESKARKQ FKGLFDKKPG EITEVGSEIR EETKTIEEID ETKDNDEIEE EERTRTVVSM
601: ERKRKWSEKA WPIMKNVIVQ IGIQLGYVSS RFT
101: HKGEIAMFKM KPEMHYAEKD CPVLAPGNFP KDDELHFEIE LLDFAKAKAI SHHELLRYSI ASDDLGVIKK ILNEGEGWES PREPYEVKAR ISAISGDGKV
201: ILSHKEEPYF FTFGKSEVPK GLEIGIGTMA RKEKAVIYVR KQYLTESPLM HIAQDFEEVH FEVELVHFIQ VRDMLGDGRL IKRRVRDGRG EFPMDCPLQD
301: SRLSVHYKGM LLNEEKTVFY DSRIENNDHP LEFSSGEGLV PEGFEMCTRL MLPGEIALVT CPPDYAYDKF PRPPGVPEGA HVQWEIELLG FETPKDWTGL
401: DFQSIMNEAE NIRNTGNRLF KEGKFELAKA KYEKVLREFN HVNPQDDEEG KVFGDARNML HLNVAACLLK MGEWRKSLET CNKVLEAKPG HVKGLYRRGM
501: AYMAGGEYED ARNDFNMMIK VDKSSEADAT AALFKLKQKE QEAESKARKQ FKGLFDKKPG EITEVGSEIR EETKTIEEID ETKDNDEIEE EERTRTVVSM
601: ERKRKWSEKA WPIMKNVIVQ IGIQLGYVSS RFT
001: MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT
Arabidopsis Description
PAS1Peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Source:UniProtKB/Swiss-Prot;Acc:Q7DMA9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.