Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84517 | Canola | cytosol, mitochondrion, plastid | 50.0 | 52.68 |
| CDY58272 | Canola | cytosol, mitochondrion, plastid | 48.31 | 50.89 |
| CDX81222 | Canola | cytosol, mitochondrion, plastid | 47.46 | 50.0 |
| CDY18714 | Canola | endoplasmic reticulum, extracellular | 49.15 | 44.96 |
| GSMUA_Achr5P05550_001 | Banana | cytosol, mitochondrion, plastid | 38.14 | 37.19 |
| CDY46798 | Canola | cytosol | 20.34 | 32.43 |
| CDY31323 | Canola | extracellular | 26.27 | 23.48 |
| CDY41214 | Canola | nucleus | 17.8 | 11.05 |
| CDY40236 | Canola | nucleus | 17.8 | 11.05 |
| CDY15104 | Canola | cytosol | 17.8 | 7.58 |
| CDX78057 | Canola | cytosol | 19.49 | 6.5 |
| CDY29061 | Canola | cytosol | 19.49 | 6.44 |
| CDX73664 | Canola | cytosol | 19.49 | 6.17 |
| CDX90622 | Canola | cytosol | 20.34 | 6.08 |
| CDY34049 | Canola | cytosol | 5.08 | 5.94 |
| CDY15103 | Canola | cytosol | 17.8 | 3.76 |
| CDY52281 | Canola | cytosol | 17.8 | 3.76 |
| CDX85348 | Canola | cytosol | 17.8 | 3.68 |
| CDX86295 | Canola | cytosol | 17.8 | 3.66 |
| CDX76177 | Canola | cytosol | 16.1 | 3.0 |
| CDY15096 | Canola | cytosol | 17.8 | 2.98 |
| CDY13167 | Canola | cytosol | 16.1 | 2.96 |
| CDY07563 | Canola | cytosol | 14.41 | 2.65 |
| CDX67584 | Canola | cytosol | 14.41 | 2.62 |
| CDY00829 | Canola | cytosol | 6.78 | 2.24 |
| CDY64639 | Canola | endoplasmic reticulum, extracellular | 0.85 | 0.37 |
| CDY00831 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY02979 | EnsemblPlantsGene:GSBRNA2T00115276001 | Gene3D:3.10.50.40 | InterPro:PPIase_FKBP | PANTHER:PTHR10516 | PANTHER:PTHR10516:SF214 |
| ProteinID:CDY02979 | ProteinID:CDY02979.1 | SUPFAM:SSF54534 | UniParc:UPI0004EF2FAC | MapMan:35.1 | : |
Description
BnaC07g22480D
Coordinates
chrLK031939:+:63318..65446
Molecular Weight (calculated)
13201.2 Da
IEP (calculated)
10.391
GRAVY (calculated)
-0.295
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPFLRKKIV PWIYHYKFYC FVDQYNKTVE RDGAAGNGAE KQIIRPGTGP KRAPDQTVTV HCTGFGKGGD LSQQFWSTKD AGQKPVIKGN IFLCVIGMQI
101: GEVARLRHVV SKVCGMKV
101: GEVARLRHVV SKVCGMKV
001: MGVEKQVIRP GNGPKPAPGQ TVTVHCTGFG KDGDLSQKFW STKDEGQKPF SFQIGKGAVI KGWDEGVIGM QIGEVARLRC SSDYAYGAGG FPAWGIQPNS
101: VLDFEIEVLS VQ
101: VLDFEIEVLS VQ
Arabidopsis Description
FKBP12Peptidyl-prolyl cis-trans isomerase FKBP12 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGG0]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.