CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54010.1	CDX70995	AT5G22290.1	16803883
AT3G54010.1	CDX88803	AT5G22290.1	16803883
AT3G54010.1	CDX92368	AT5G22290.1	16803883
AT3G54010.1	CDY09128	AT5G22290.1	16803883
AT3G54010.1	CDY35676	AT5G22290.1	16803883

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76177	Canola	cytosol	93.3	94.63
CDY07563	Canola	cytosol	89.88	89.88
CDX67584	Canola	cytosol	90.5	89.52
AT3G54010.1	Thale cress	cytosol	87.69	88.66
KRH62430	Soybean	cytosol	68.07	70.26
VIT_08s0007g01460.t01	Wine grape	nucleus	67.45	69.84
KRH75755	Soybean	cytosol, endoplasmic reticulum	67.6	69.77
Solyc11g011420.1.1	Tomato	cytosol, plastid	62.77	69.01
TraesCS1B01G192700.1	Wheat	cytosol, mitochondrion	61.53	65.07
TraesCS1D01G192100.3	Wheat	cytosol	63.08	64.9
TraesCS1A01G184600.1	Wheat	cytosol	62.93	64.74
Os03t0367000-01	Rice	plasma membrane	62.62	63.61
EER94808	Sorghum	cytosol	61.99	63.17
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	61.06	62.82
Zm00001d047426_P003	Maize	cytosol	62.15	60.82
HORVU4Hr1G042800.9	Barley	cytosol	60.28	58.28
CDY46798	Canola	cytosol	3.74	32.43
CDY34049	Canola	cytosol	4.83	30.69
CDY52281	Canola	cytosol	25.86	29.75
CDY15103	Canola	cytosol	25.86	29.75
CDY15104	Canola	cytosol	12.77	29.6
CDY58272	Canola	cytosol, mitochondrion, plastid	5.14	29.46
CDX84517	Canola	cytosol, mitochondrion, plastid	5.14	29.46
CDX85348	Canola	cytosol	25.55	28.77
CDX86295	Canola	cytosol	25.08	28.1
CDX81222	Canola	cytosol, mitochondrion, plastid	4.83	27.68
CDY18714	Canola	endoplasmic reticulum, extracellular	5.14	25.58
CDY41214	Canola	nucleus	7.01	23.68
CDY40236	Canola	nucleus	6.85	23.16
CDY00831	Canola	cytosol	6.54	22.11
CDY31323	Canola	extracellular	4.36	21.21
CDX78057	Canola	cytosol	11.53	20.9
CDY64639	Canola	endoplasmic reticulum, extracellular	8.72	20.9
CDX73664	Canola	cytosol	11.99	20.64
CDY29061	Canola	cytosol	11.37	20.45
CDX90622	Canola	cytosol	12.15	19.75
CDY00829	Canola	cytosol	10.44	18.77
CDY02979	Canola	mitochondrion	2.96	16.1
CDY15096	Canola	cytosol	17.29	15.74

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	GO:A0A078FJJ5	UniProt:A0A078FJJ5	EnsemblPlants:CDY13167
ProteinID:CDY13167	ProteinID:CDY13167.1	ncoils:Coil	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006464	GO:GO:0006629
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016853	GO:GO:0019538	GO:GO:0030154	GO:GO:0042761	GO:GO:0048513
GO:GO:0099402	EnsemblPlantsGene:GSBRNA2T00071033001	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
InterPro:PAS1	PFAM:PF00254	PFAM:PF13174	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005
PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516	PANTHER:PTHR10516:SF268	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF54534	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EF2B37
SEG:seg	:	:	:	:	:

Description

BnaC04g26680DPeptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A078FJJ5]

Coordinates

chrLK032032:+:128534..132832

Molecular Weight (calculated)

72897.4 Da

IEP (calculated)

5.552

GRAVY (calculated)

-0.573

Length

642 amino acids

Sequence
(BLAST)

001: MDATEQNRLP KKKKSETEDD KSRRKKIVPG SLLKALVRPG GGESSPVDGD QVIYHRTVRT LDGVVVESTK LECGGRGLPI RDVLGKSKMI LGLLEGIPTM
101: HKGEIAMFKM KPEMHYAEKD CPVLAPGDFP KDDELHFEIE LLDFAKAKAR SHHELRYSIA SDDLGVVKKI LNEGEGWESP REPYEVKARI SAISGGGQVI
201: LSRKEEPYFF TFGKSEVPEG LEIGIGTMAR KEKAVIYVRR QYLTESPLMD IAQDLEEVHF EVELVHFIQV RDMLGDGRLI KRRIQDGRGE FPMDCPLQDS
301: RLSVHYKGML LNEEKTVFYD SRIENNDHPL EFSSGEGLVP EGFEMCTRLM LPGEIALVTC PPDYAYDKFP RPPGVPEGAH VRWEIELLSF ETPRDWTGLD
401: FQSIMNEAEN IRSTGNRLFK EGKFELAKAK YEKVLREFNH VNPQDDEEGK VFGDARNMLH LNVAACLLKM GEWRKSLETC NKVLEAKPGH VKGLYRRGMA
501: YMAGGEYEDA RNDFNMMVKV DKSSEADATA ALLKLKQKEQ EAESKARKQF KGLFDKKPGE ITEVGSEIRE ETKTIEEIDE TKDDEIEEEE ERTRTVVSTE
601: RKRKWSEKAW PITKNVMVQI GIQVGVALLG VLIFQFVSSR FT

Best Arabidopsis Sequence Match ( AT3G54010.1 )
(BLAST)

001: MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT

Arabidopsis Description

PAS1Peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Source:UniProtKB/Swiss-Prot;Acc:Q7DMA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.