Factsheet for Solyc11g011420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, vacuole
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54010.1	Solyc06g074170.2.1	AT5G22290.1	16803883
AT3G54010.1	Solyc11g068750.1.1	AT5G22290.1	16803883

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g01460.t01	Wine grape	nucleus	75.0	70.65
KRH62430	Soybean	cytosol	74.14	69.61
KRH75755	Soybean	cytosol, endoplasmic reticulum	73.97	69.45
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	69.52	65.06
CDX76177	Canola	cytosol	70.03	64.61
AT3G54010.1	Thale cress	cytosol	69.86	64.25
TraesCS1B01G192700.1	Wheat	cytosol, mitochondrion	66.27	63.76
Bra014849.1-P	Field mustard	cytosol	70.03	63.71
CDY13167	Canola	cytosol	69.01	62.77
Bra003166.1-P	Field mustard	cytosol	69.18	62.54
CDY07563	Canola	cytosol	68.49	62.31
TraesCS1D01G192100.3	Wheat	cytosol	66.44	62.18
TraesCS1A01G184600.1	Wheat	cytosol	66.1	61.86
Os03t0367000-01	Rice	plasma membrane	66.78	61.71
CDX67584	Canola	cytosol	68.49	61.63
EER94808	Sorghum	cytosol	66.27	61.43
Zm00001d047426_P003	Maize	cytosol	66.78	59.45
HORVU4Hr1G042800.9	Barley	cytosol	62.5	54.97
Solyc01g105710.2.1	Tomato	extracellular	6.16	32.14
Solyc06g083190.2.1	Tomato	extracellular	28.77	29.27
Solyc09g057660.2.1	Tomato	cytosol	27.4	28.73
Solyc10g078250.1.1	Tomato	cytosol	4.45	28.57
Solyc09g092690.2.1	Tomato	cytosol	28.25	28.4
Solyc10g078260.1.1	Tomato	cytosol	20.03	27.08
Solyc01g087470.2.1	Tomato	cytosol	13.87	24.92
Solyc04g011620.2.1	Tomato	nucleus	7.88	24.73
Solyc04g077660.2.1	Tomato	cytosol	24.49	24.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	ncoils:Coil	GO:GO:0000003	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005528
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005829
GO:GO:0006464	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009719	GO:GO:0009735	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009826	GO:GO:0009880	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0016853
GO:GO:0019538	GO:GO:0030010	GO:GO:0030154	GO:GO:0040007	GO:GO:0042761	GO:GO:0048364
GO:GO:0048527	GO:GO:0061077	GO:GO:0099402	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:K4D5U7	InterPro:PAS1	PFAM:PF00254	PFAM:PF07719	PFAM:PF13181
InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516
PANTHER:PTHR10516:SF268	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	EnsemblPlantsGene:Solyc11g011420.1	EnsemblPlants:Solyc11g011420.1.1
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI0002769AB8	SEG:seg

Description

Peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Source:Projected from Arabidopsis thaliana (AT3G54010) UniProtKB/Swiss-Prot;Acc:Q7DMA9]

Coordinates

chr11:+:4485102..4493711

Molecular Weight (calculated)

66030.0 Da

IEP (calculated)

5.190

GRAVY (calculated)

-0.509

Length

584 amino acids

Sequence
(BLAST)

001: MKAIVRPGGG ESKPAEGNQV IYHCTVRTLD GVTVESTRSE FGGKGTPIRH VVGKSKIILG LLEGIPTMLK GEVAMFKMKP EMHYGEKDCP VAAPDNFPKD
101: SELHFEIELI EFSKVKVITD DLGVLKKVIE EGQSWETPRE PYEVKAWISA KSADGKVILS WTKDEPYFFT FGKPEVPKGL ELAIATMPRG EKAVIYVKSQ
201: YYTESTLMPV VEGVDEVHFE VELVHFIQVR DVLGDGRLIK RRIRDGRGEF PMDCPLQDSL LRVHYKGLLL NEEKTVFYDT RIDNNGQPLE FSSGEGLVPQ
301: GFEMSVRLML PGEVSLVTCP PDYAYDKFER PANVPEGAYV QWEIELLDFN TPKDWTGFSF REIMDDVEKI KGTGNRLFKE EKFELAKAKY EKVLREFNHV
401: HPQDDEEGKE FANTRNLLHL NVAACLLKLG EHKKSIETCN KVLDANPVHV KALYRRGMAY MASGDYEEAR ADFNKMMSID KSSEASAKAA LLKLKKEEQE
501: VERRVRKQFK GLFDKRPGEI AEVGTNDGQD DEATSENVEK DDLDNLDDQE ERTRQTTVPP PPPGILSQLR KLFASVGLNR CTIL

Best Arabidopsis Sequence Match ( AT3G54010.1 )
(BLAST)

001: MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT

Arabidopsis Description

PAS1Peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Source:UniProtKB/Swiss-Prot;Acc:Q7DMA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.