Factsheet for Bra003166.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002403.1-P
Bra006619.1-P
Bra020182.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54010.1	Bra002403.1-P	AT5G22290.1	16803883
AT3G54010.1	Bra006619.1-P	AT5G22290.1	16803883
AT3G54010.1	Bra020182.1-P	AT5G22290.1	16803883

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67584	Canola	cytosol	98.76	98.31
Bra014849.1-P	Field mustard	cytosol	91.33	91.9
AT3G54010.1	Thale cress	cytosol	88.39	89.92
KRH62430	Soybean	cytosol	67.8	70.42
KRH75755	Soybean	cytosol, endoplasmic reticulum	67.49	70.1
VIT_08s0007g01460.t01	Wine grape	nucleus	67.18	70.0
Solyc11g011420.1.1	Tomato	cytosol, plastid	62.54	69.18
TraesCS1B01G192700.1	Wheat	cytosol, mitochondrion	60.06	63.92
TraesCS1D01G192100.3	Wheat	cytosol	61.61	63.78
TraesCS1A01G184600.1	Wheat	cytosol	61.3	63.46
Os03t0367000-01	Rice	plasma membrane	61.92	63.29
EER94808	Sorghum	cytosol	61.15	62.7
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	60.22	62.34
Zm00001d047426_P003	Maize	cytosol	61.15	60.21
HORVU4Hr1G042800.9	Barley	cytosol	58.67	57.08
Bra013224.1-P	Field mustard	cytosol	25.23	28.75
Bra037775.1-P	Field mustard	cytosol, mitochondrion, plastid	4.95	28.57
Bra024287.1-P	Field mustard	cytosol, mitochondrion, plastid	4.95	28.57
Bra037477.1-P	Field mustard	cytosol	24.46	27.57
Bra007173.1-P	Field mustard	nucleus	6.66	22.63
Bra006895.1-P	Field mustard	cytosol	12.07	21.37
Bra012823.1-P	Field mustard	cytosol	11.46	20.73

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	EnsemblPlantsGene:Bra003166	EnsemblPlants:Bra003166.1	EnsemblPlants:Bra003166.1-P
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0006464	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853	GO:GO:0019538
GO:GO:0030154	GO:GO:0042761	GO:GO:0099402	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:M4CG33	InterPro:PAS1	PFAM:PF00254	PFAM:PF13174	InterPro:PPIase_FKBP
InterPro:PPIase_FKBP_dom	PFscan:PS50005	PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516	PANTHER:PTHR10516:SF268
SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF54534	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI00025413CB	SEG:seg	:	:	:

Description

AT3G54010 (E=2e-246) PAS1, DEI1 | PAS1 (PASTICCINO 1); FK506 binding / binding / peptidyl-prolyl cis-trans isomerase

Coordinates

chrA07:+:11652385..11656245

Molecular Weight (calculated)

73024.3 Da

IEP (calculated)

5.528

GRAVY (calculated)

-0.564

Length

646 amino acids

Sequence
(BLAST)

001: MDAAEQNHLL PKKKKSETED DKRRKRIVAG SLLKAVVRPG GGDSSPKDAD QIIYHCTVRT LDGVVVESTR SECGGRGLPI RDVLGKSKMI LGLLEGIPTM
101: HKAEIAMFKM KPEMHYAEKD CPVSAPGNFP KDDVLHFEIE LLDFAKAKAR SHHQNQDALI ASDDLGVIKK ILNEGEGWES PREPYEVKAW ISAKSGDGQV
201: ILAPKEEPYF FTFGKSEVPK GLEIGIGTMA RKEKAVIYVR KQYLTESTLM HIAQDLEEVH FEVELVHFIQ VRDMLGDGRL IKRRIRDGRG EFPMDCPLQD
301: SRLSVHYRGM LLNEDKTVFY DSRIENGDQP LEFSSGEGLV PEGFEMCTRL MLPGEIALVT CPPDYAYDKF PRPPGVPEGA HVQWEIELLG FETPRDWTGL
401: DFQSIMNEAE NIRSTGNRLF KEGKFELAKA KYEKVLREFN HVNPQNDDEG KVFGDARNML HLNVAACLLK LGEWRKSLET CNKVLEAKPG HAKGLYRRGM
501: AYMAGGEYED ARNDFNMMIK VDKSSEADAT AALLKLKQKE QEAESKARKQ FKGLFDKKPG EITEVGSEIR EETRTIEEVD ETKDNDGDDE ETQEEENTAT
601: VSTERKRKWS EKAWPILKNV MVQIGIQLCV ALLGVYIFQF VSARFT

Best Arabidopsis Sequence Match ( AT3G54010.1 )
(BLAST)

001: MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT

Arabidopsis Description

PAS1Peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Source:UniProtKB/Swiss-Prot;Acc:Q7DMA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.