CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54010.1	CDX70995	AT5G22290.1	16803883
AT3G54010.1	CDX88803	AT5G22290.1	16803883
AT3G54010.1	CDX92368	AT5G22290.1	16803883
AT3G54010.1	CDY09128	AT5G22290.1	16803883
AT3G54010.1	CDY35676	AT5G22290.1	16803883

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003166.1-P	Field mustard	cytosol	98.31	98.76
CDY07563	Canola	cytosol	92.6	93.61
CDX76177	Canola	cytosol	89.37	91.63
CDY13167	Canola	cytosol	89.52	90.5
AT3G54010.1	Thale cress	cytosol	87.83	89.76
KRH62430	Soybean	cytosol	67.18	70.1
VIT_08s0007g01460.t01	Wine grape	nucleus	66.56	69.68
KRH75755	Soybean	cytosol, endoplasmic reticulum	66.72	69.61
Solyc11g011420.1.1	Tomato	cytosol, plastid	61.63	68.49
TraesCS1B01G192700.1	Wheat	cytosol, mitochondrion	59.48	63.59
TraesCS1D01G192100.3	Wheat	cytosol	61.02	63.46
TraesCS1A01G184600.1	Wheat	cytosol	60.71	63.14
Os03t0367000-01	Rice	plasma membrane	61.33	62.97
EER94808	Sorghum	cytosol	60.55	62.38
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	59.78	62.18
Zm00001d047426_P003	Maize	cytosol	60.55	59.91
HORVU4Hr1G042800.9	Barley	cytosol	58.09	56.78
CDY34049	Canola	cytosol	4.78	30.69
CDY46798	Canola	cytosol	3.39	29.73
CDY15103	Canola	cytosol	25.27	29.39
CDY52281	Canola	cytosol	24.96	29.03
CDY15104	Canola	cytosol	12.33	28.88
CDX85348	Canola	cytosol	24.81	28.25
CDY58272	Canola	cytosol, mitochondrion, plastid	4.78	27.68
CDX84517	Canola	cytosol, mitochondrion, plastid	4.78	27.68
CDX86295	Canola	cytosol	24.35	27.57
CDX81222	Canola	cytosol, mitochondrion, plastid	4.47	25.89
CDY18714	Canola	endoplasmic reticulum, extracellular	4.78	24.03
CDY41214	Canola	nucleus	6.63	22.63
CDY40236	Canola	nucleus	6.47	22.11
CDY00831	Canola	cytosol	6.47	22.11
CDY64639	Canola	endoplasmic reticulum, extracellular	8.63	20.9
CDX73664	Canola	cytosol	11.86	20.64
CDX78057	Canola	cytosol	11.25	20.62
CDY29061	Canola	cytosol	11.25	20.45
CDX90622	Canola	cytosol	12.02	19.75
CDY31323	Canola	extracellular	3.7	18.18
CDY00829	Canola	cytosol	9.71	17.65
CDY15096	Canola	cytosol	16.8	15.46
CDY02979	Canola	mitochondrion	2.62	14.41

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.2	Gene3D:3.10.50.40	GO:A0A078BV90	EnsemblPlants:CDX67584	ProteinID:CDX67584
ProteinID:CDX67584.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006629	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0042761
GO:GO:0048513	GO:GO:0099402	EnsemblPlantsGene:GSBRNA2T00098723001	InterPro:IPR001179	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	InterPro:PAS1	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50005
PFscan:PS50059	PFscan:PS50293	PANTHER:PTHR10516	PANTHER:PTHR10516:SF268	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF54534	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EF30AE
SEG:seg	:	:	:	:	:

Description

BnaA07g16240D

Coordinates

chrLK031787:+:1086950..1090928

Molecular Weight (calculated)

73358.6 Da

IEP (calculated)

5.625

GRAVY (calculated)

-0.580

Length

649 amino acids

Sequence
(BLAST)

001: MDAAEQNHLL PKKKKSETED DKRRKRIVAG SLLKAVVRPG GGDSSPKDAD QIIYHCTVRT LDGVVVESTR SECGGRGLPI RDVLGKSKMI LGLLEGIPTM
101: HKAEIAMFKM KPEMHYAEKD CPVSAPGNFP KDDELHFEIE LLDFAKAKAR SHHQNQDNSA LIASDDLGVI KKILNEGEGW ESPREPYEVK AWISAKSGDG
201: QVILAPKEEP YFFTFGTSEV PKGLEIGIGT MARKEKAVIY VRKQYLTESP LMHIAQDLEE VHFEVELVHF IQVRDMLGDG RLIKRRIRDG RGEFPMDCPL
301: QDSRLSIHYR GMLLNEDKTV FYDSRIENGD QPLEFSSGEG LVPEGFEMCT RLMLPGEIAL VTCPPDYAYD KFPRSPPGVP KGAHVQWEIE LLGFETPRDW
401: TGLDFQSIMN EAENIRSTGN RLFKEGKFEL AKAKYEKVLR EFNHVNPQDD DEGKVFGDAR NMLHLNVAAC LLKLGEWRKS LETCNKVLEA KPGHAKGFYR
501: RGMAYMAGGE YKDARNDFNM MIKVDKSSEA DATAALLKLK QKEQEAESKA RKQFKGLFDK KPGEITEVGS EIREETRTIE EVDETKDNDG DDEETQEEEN
601: TATVSTERKR KWSEKAWPIL KNVMVQIGIQ LCVALLGVYI FQFVSARFT

Best Arabidopsis Sequence Match ( AT3G54010.1 )
(BLAST)

001: MAVGDQTEQN YLPKKKKSET EDDKRRKKIV PGSLLKAVVR PGGGDSSPVD GDQVIYHCTV RTLDGVVVES TRSESGGRGV PIRDVLGNSK MILGLLEGIP
101: TMHKGEIAMF KMKPEMHYAE IDCPVSAPEN FPKDDELHFE IELLDFSKAK IASDDLGVIK KILNEGEGWE SPREPYEVKA RISAKSGDGH VIFSHTEEPY
201: FFTFGKSEVP KGLEIGIGTM ARKEKAVIYV RKQYLTESPL LHIDQDLEEV HFEVELVHFI QVRDMLGDGR LIKRRIRDGR GEFPMDCPLQ DSRLSVHYKG
301: MLLNEEKTVF YDSKIDNNDQ PLEFSSGEGL VPEGFEMCTR LMLPGEIALV TCPPDYAYDK FPRPPGVSEG AHVQWEIELL GFETPRDWTG LNFQSIMDEA
401: DKIRSTGNRL FKEGKFELAK AKYEKVLREF NHVNPQDEDE GKIFGDTRNM LHLNVAACLL KMGEWRKSIE TCNKVLEAKP GHVKGLYRRG MAYIAGGEYD
501: DARNDFNMMI KVDKSSEADA TAALLKLKQK EQEAESKARK QFKGLFDKRP GEITEVGSEI REESKTIEEV DETKDNDDDE TLEEEGATTV STERKRKWSE
601: KAWPFLKNVM LQIGIQLGVV LIGILIFQFV SAKFT

Arabidopsis Description

PAS1Peptidyl-prolyl cis-trans isomerase PASTICCINO1 [Source:UniProtKB/Swiss-Prot;Acc:Q7DMA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.