CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79704
CDX84290
CDX84896
CDX84897
CDX86408
CDY00109
CDY20012
CDY27639
CDY27839
CDY31633
CDY46744
CDY50297
CDY65012

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21640.1	CDX84896	AT1G27940.1	14517332
AT3G21640.1	CDX84897	AT1G27940.1	14517332
AT3G21640.1	CDY27639	AT1G27940.1	14517332
AT3G21640.1	CDX84290	AT2G34660.1	15133126
AT3G21640.1	CDY31633	AT2G34660.1	15133126
AT3G21640.1	CDX79704	AT2G36910.1	14517332
AT3G21640.1	CDY46744	AT2G36910.1	14517332
AT3G21640.1	CDX86408	AT3G28860.1	14517332
AT3G21640.1	CDY00109	AT3G28860.1	14517332
AT3G21640.1	CDY20012	AT3G28860.1	14517332
AT3G21640.1	CDY65012	AT3G28860.1	14517332
AT3G21640.1	CDY27839	AT5G52640.1	12410806
AT3G21640.1	CDY50297	AT5G52640.1	12410806

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64639	Canola	endoplasmic reticulum, extracellular	73.27	27.61
CDX78057	Canola	cytosol	94.06	26.84
CDX73664	Canola	cytosol	96.04	26.01
CDY29061	Canola	cytosol	91.09	25.77
AT3G21640.1	Thale cress	cytosol	88.12	24.38
VIT_13s0064g00580.t01	Wine grape	cytosol	87.13	24.11
CDX90622	Canola	cytosol	92.08	23.54
EES07974	Sorghum	cytosol	83.17	22.83
PGSC0003DMT400017681	Potato	cytosol	83.17	22.83
Zm00001d004930_P001	Maize	mitochondrion	83.17	22.46
KRH23877	Soybean	cytosol, endoplasmic reticulum, nucleus	81.19	22.16
Os12t0145500-01	Rice	cytosol	80.2	21.89
KRH39924	Soybean	endoplasmic reticulum	80.2	21.89
Os11t0148300-01	Rice	cytosol	80.2	21.6
TraesCS5A01G134500.3	Wheat	cytosol	78.22	21.41
GSMUA_Achr6P12690_001	Banana	cytosol	79.21	21.39
TraesCS5B01G131200.1	Wheat	cytosol	78.22	21.35
TraesCS5D01G139000.1	Wheat	cytosol	78.22	21.35
Solyc01g087470.2.1	Tomato	cytosol	68.32	21.23
HORVU5Hr1G041060.1	Barley	cytosol, plastid	77.23	18.35
CDY46798	Canola	cytosol	9.9	13.51
CDX84517	Canola	cytosol, mitochondrion, plastid	9.9	8.93
CDX81222	Canola	cytosol, mitochondrion, plastid	9.9	8.93
CDY58272	Canola	cytosol, mitochondrion, plastid	9.9	8.93
CDY18714	Canola	endoplasmic reticulum, extracellular	9.9	7.75
CDY31323	Canola	extracellular	9.9	7.58
CDY52281	Canola	cytosol	35.64	6.45
CDY15103	Canola	cytosol	35.64	6.45
CDY15104	Canola	cytosol	16.83	6.14
CDX85348	Canola	cytosol	32.67	5.79
CDX86295	Canola	cytosol	32.67	5.76
CDY41214	Canola	nucleus	9.9	5.26
CDY40236	Canola	nucleus	9.9	5.26
CDY02979	Canola	mitochondrion	5.94	5.08
CDX76177	Canola	cytosol	30.69	4.9
CDY13167	Canola	cytosol	30.69	4.83
CDY07563	Canola	cytosol	30.69	4.83
CDX67584	Canola	cytosol	30.69	4.78
CDY00831	Canola	cytosol	8.91	4.74
CDY15096	Canola	cytosol	17.82	2.55
CDY00829	Canola	cytosol	5.94	1.68

Protein Annotations

EnsemblPlants:CDY34049	EnsemblPlantsGene:GSBRNA2T00055923001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:PPIase_FKBP	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR43811	PANTHER:PTHR43811:SF21	ProteinID:CDY34049
ProteinID:CDY34049.1	SUPFAM:SSF54534	UniParc:UPI0004EB1C58	UniProt:A0A078H9A8	MapMan:35.1	:

Description

BnaC03g27660DBnaC03g27660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9A8]

Coordinates

chrLK032326:+:425243..425889

Molecular Weight (calculated)

11541.1 Da

IEP (calculated)

8.685

GRAVY (calculated)

-0.359

Length

101 amino acids

Sequence
(BLAST)

001: MAGLAIGVSS MKSGERALLH IGWELGYGNF FSKTDRRKMD GNNLFKEDKL EEAMQQYEMA IAYMGDDFMF QLYGKYQDMA LAVKNPCHLN MAACSIKLKR
101: R

Best Arabidopsis Sequence Match ( AT3G21640.1 )
(BLAST)

001: MDESLEHQTQ THDQESEIVT EGSAVVHSEP SQEGNVPPKV DSEAEVLDEK VSKQIIKEGH GSKPSKYSTC FLHYRAWTKN SQHKFEDTWH EQQPIELVLG
101: KEKKELAGLA IGVASMKSGE RALVHVGWEL AYGKEGNFSF PNVPPMADLL YEVEVIGFDE TKEGKARSDM TVEERIGAAD RRKMDGNSLF KEEKLEEAMQ
201: QYEMAIAYMG DDFMFQLYGK YQDMALAVKN PCHLNIAACL IKLKRYDEAI GHCNIVLTEE EKNPKALFRR GKAKAELGQM DSARDDFRKA QKYAPDDKAI
301: RRELRALAEQ EKALYQKQKE MYKGIFKGKD EGGAKSKSLF WLIVLWQWFV SLFSRIFRRH RVKAD

Arabidopsis Description

FKBP42Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V6X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.