CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73664
CDX78057
CDX82059
CDX88606
CDX90622
CDX96484
CDY11886
CDY20694
CDY29061
CDY34049
CDY38263
CDY47745
CDY53978
CDY64639
CDY69709
CDY72296

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28860.1	CDX82059	AT1G73590.1	17237354
AT3G28860.1	CDX96484	AT1G73590.1	17237354
AT3G28860.1	CDY47745	AT1G73590.1	17237354
AT3G28860.1	CDY72296	AT1G73590.1	17237354
AT3G28860.1	CDX73664	AT3G21640.1	14517332
AT3G28860.1	CDX78057	AT3G21640.1	14517332
AT3G28860.1	CDX90622	AT3G21640.1	14517332
AT3G28860.1	CDY29061	AT3G21640.1	14517332
AT3G28860.1	CDY34049	AT3G21640.1	14517332
AT3G28860.1	CDY64639	AT3G21640.1	14517332
AT3G28860.1	CDX88606	AT5G57090.1	17237354
AT3G28860.1	CDY11886	AT5G57090.1	17237354
AT3G28860.1	CDY20694	AT5G57090.1	17237354
AT3G28860.1	CDY38263	AT5G57090.1	17237354
AT3G28860.1	CDY53978	AT5G57090.1	17237354
AT3G28860.1	CDY69709	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20012	Canola	plasma membrane	99.36	98.72
Bra039042.1-P	Field mustard	plasma membrane	99.04	98.48
CDX86408	Canola	plasma membrane	96.14	96.77
CDY65012	Canola	plasma membrane	96.79	96.17
AT3G28860.1	Thale cress	plasma membrane	95.82	95.29
PGSC0003DMT400003590	Potato	plasma membrane	89.8	89.51
KRH18485	Soybean	endoplasmic reticulum, mitochondrion	89.72	89.43
Solyc02g087870.2.1	Tomato	plasma membrane	89.64	89.35
KRG93519	Soybean	cytosol, peroxisome, plasma membrane	89.48	89.12
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	88.75	88.4
GSMUA_Achr8P24160_001	Banana	plasma membrane	77.99	86.16
Os04t0459000-01	Rice	plasma membrane	82.49	81.57
TraesCS2D01G322600.1	Wheat	cytosol, peroxisome, plasma membrane	82.01	80.84
TraesCS2B01G341800.2	Wheat	cytosol, peroxisome, plasma membrane	82.01	80.78
TraesCS2A01G344300.1	Wheat	cytosol, peroxisome, plasma membrane	81.69	80.52
EES12287	Sorghum	cytosol, peroxisome, plasma membrane	81.53	80.43
HORVU2Hr1G080200.1	Barley	plasma membrane	81.69	80.27
Zm00001d025590_P002	Maize	cytosol, nucleus, plasma membrane	81.77	79.97
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	81.04	79.7
Os04t0642000-01	Rice	cytosol, peroxisome, plasma membrane	38.8	78.92
Zm00001d002119_P006	Maize	cytosol	80.08	78.75
TraesCS2B01G550700.2	Wheat	plasma membrane	79.36	78.6
Zm00001d026426_P005	Maize	cytosol	80.24	78.48
HORVU2Hr1G115180.1	Barley	cytosol, peroxisome, plasma membrane	79.68	78.11
TraesCS2D01G523100.2	Wheat	cytosol	79.68	78.05
TraesCS2A01G521400.2	Wheat	cytosol, peroxisome, plasma membrane	79.36	78.04
GSMUA_Achr4P09980_001	Banana	plasma membrane	71.41	77.71
CDX84897	Canola	cytosol	6.51	68.64
CDX86437	Canola	cytosol	7.31	61.07
CDX94395	Canola	plasma membrane	50.6	51.05
CDY27639	Canola	plasma membrane	49.72	50.82
CDY37953	Canola	plasma membrane	49.72	50.53
CDX93393	Canola	plasma membrane	49.64	50.45
CDX86442	Canola	cytosol, mitochondrion, plastid	2.73	50.0
CDX89380	Canola	plasma membrane	50.6	49.41
CDY46744	Canola	cytosol, peroxisome, plasma membrane	52.45	48.8
CDX92739	Canola	plasma membrane	48.59	48.75
CDX79704	Canola	plasma membrane	52.37	48.62
CDX84896	Canola	plasma membrane	39.84	47.19
CDY42770	Canola	golgi, plasma membrane, vacuole	42.97	47.14
CDY48003	Canola	cytosol	44.66	46.64
CDX80072	Canola	cytosol	44.82	46.58
CDY27510	Canola	cytosol	44.74	46.46
CDX67881	Canola	cytosol	44.26	45.88
CDY37776	Canola	cytosol, peroxisome, plasma membrane	45.54	45.62
CDY25095	Canola	cytosol	44.18	45.61
CDX86445	Canola	plasma membrane	45.54	45.58
CDY35168	Canola	golgi, peroxisome, plasma membrane	39.76	45.37
CDX85192	Canola	plasma membrane	45.62	44.76
CDY15432	Canola	cytosol	43.86	44.61
CDY04018	Canola	plasma membrane	44.42	44.56
CDY51307	Canola	cytosol, peroxisome, plasma membrane	44.98	44.3
CDX89963	Canola	cytosol, nucleus, plasma membrane	44.74	44.07
CDY15249	Canola	cytosol, peroxisome, plasma membrane	44.66	43.78
CDY24379	Canola	plasma membrane	40.96	43.63
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	40.64	43.17
CDY58790	Canola	peroxisome	42.57	43.05
CDY51560	Canola	peroxisome	42.41	42.21
CDY21871	Canola	endoplasmic reticulum, plasma membrane	2.41	41.67
CDY64952	Canola	peroxisome, plasma membrane, vacuole	29.96	37.87
CDY65312	Canola	cytosol	42.09	37.46
CDX76106	Canola	cytosol, golgi, peroxisome	41.93	37.29
CDY24958	Canola	mitochondrion, plasma membrane, plastid	41.61	37.13
CDY07647	Canola	cytosol	41.69	37.05
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	41.69	37.05
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	41.85	37.0

Protein Annotations

Gene3D:1.20.1560.10	MapMan:11.2.4.3	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	GO:A0A078EH59	InterPro:AAA+_ATPase
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlants:CDY00109	ProteinID:CDY00109
ProteinID:CDY00109.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00109610001
InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF382	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI0004EE8B88	SEG:seg	:

Description

BnaC09g01920D

Coordinates

chrLK031916:+:846213..853745

Molecular Weight (calculated)

135874.0 Da

IEP (calculated)

8.378

GRAVY (calculated)

0.131

Length

1245 amino acids

Sequence
(BLAST)

0001: MSETTADAKP VPPAEAEKKK EQSLPFFKLF SFADKFDHLL MITGSIGAII HGSSMPVFFL LFGEMVNGFG KNQMDLHQMT HEVSKYALYF VYLGLVVCVS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWRLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALSSY SEAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRSGTTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKSAGYKLME IINQRPTIVQ DPLDGKCLEQ VHGNIEFKDV TFSYPSRPDV IIFRNFSIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN NAGKILLDGV EIKTLQLKFL REQIGLVNQE PALFATTILE NILYGKPNAT LDEVEAAASA ANAHSFITLL PKGYDTQVGE
0501: RGVQLSGGQK QRIAIARAML KDPKILLLDE ATSALDASSE SIVQEALDRV MVGRTTVVVA HRLCTIRNVD SIAVIQQGQV VETGTHEELI AKSGPYASLI
0601: RFQEMVGTRD FSNPSTRRTR STRLSHSLSG SLRNLSYSYS TGADGRIEMI SNAESDRKTR PPQNYFYRLL KLNAPEWPYS IMGAVGSVLS GFIGPTFAIV
0701: MSNMIEVFYY TDYVSMERKT KEYVFIYIGA GIYAVIAYLI QHYFFSIMGE NLTTRVRRMM LSAILRNEVG WFDEDEHNSS LIAARLATDA ADVKSAIAER
0801: ISVILQNMTS LLTSFIVAFI IEWRVSLLIL CTFPLLVLAN FAQQLSLKGF AGDTAKAHAK TSMIAGEGVS NIRTVAAFNA QSKILSLFSH ELRVPQKRSF
0901: YRSQTSGLLF GLSQLALYGS EAVILWYGAH LVSQGKSTFS KVIKVFVVLV ITANSVAETV SLAPEIIRGG EAVGSVFSVL DRQTRIDPDD ADADPAETIR
1001: GDIEFRHVDF AYPSRPDVMV FTDFNLRIRA GHSQALVGAS GSGKSSVIAM IERFYDPLAG KVMIDGKDIR RLNLKSLRLK IGLVQQEPAL FAATIFDNIA
1101: YGKDGATESE VIEAARAANA HGFISGLPEG YKTPVGERGV QLSGGQKQRI AIARAVLKNP SVLLLDEATS ALDAESECVL QEALERLMRG RTTVVVAHRL
1201: STIRGVDCIG VIQDGRIVEQ GRHSELVSRP EGAYSRLLQL QTHRI

Best Arabidopsis Sequence Match ( AT3G28860.1 )
(BLAST)

0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI

Arabidopsis Description

ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.