CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86445	Canola	plasma membrane	91.38	91.16
AT3G28345.1	Thale cress	plasma membrane	88.96	89.03
CDX85192	Canola	plasma membrane	90.89	88.89
CDX86437	Canola	cytosol	9.83	81.88
CDX86442	Canola	cytosol, mitochondrion, plastid	4.43	80.88
VIT_14s0066g02320.t01	Wine grape	peroxisome	69.22	74.24
CDY21871	Canola	endoplasmic reticulum, plasma membrane	4.11	70.83
Zm00001d053706_P002	Maize	mitochondrion, plasma membrane	68.01	67.9
OQU84543	Sorghum	endoplasmic reticulum, plasma membrane	67.12	67.39
Os02t0190300-01	Rice	plasma membrane	67.28	67.07
VIT_19s0085g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	65.27	66.12
Os02t0190000-00	Rice	plasma membrane	65.35	65.25
TraesCS4A01G370600.1	Wheat	plasma membrane	64.3	64.77
Os02t0189800-00	Rice	mitochondrion	38.84	64.44
TraesCS7D01G068400.1	Wheat	plasma membrane	63.82	64.29
CDX84897	Canola	cytosol	5.8	61.02
EES05229	Sorghum	plasma membrane	60.68	60.53
Zm00001d016794_P001	Maize	plasma membrane	60.44	59.71
CDY64952	Canola	peroxisome, plasma membrane, vacuole	37.63	47.41
CDY00109	Canola	plasma membrane	44.56	44.42
CDY20012	Canola	plasma membrane	44.56	44.13
CDX86408	Canola	plasma membrane	43.76	43.9
CDY65012	Canola	plasma membrane	44.24	43.81
CDY27639	Canola	plasma membrane	42.39	43.19
CDY35168	Canola	golgi, peroxisome, plasma membrane	37.39	42.53
CDX94395	Canola	plasma membrane	41.66	41.9
CDX67881	Canola	cytosol	39.97	41.3
CDY25095	Canola	cytosol	40.13	41.29
CDY27510	Canola	cytosol	39.89	41.28
CDX80072	Canola	cytosol	39.56	40.98
CDX93393	Canola	plasma membrane	40.45	40.98
CDY37953	Canola	plasma membrane	40.45	40.98
CDY48003	Canola	cytosol	39.32	40.94
CDY15432	Canola	cytosol	40.13	40.69
CDY24379	Canola	plasma membrane	38.28	40.63
CDY51307	Canola	cytosol, peroxisome, plasma membrane	41.26	40.51
CDX89380	Canola	plasma membrane	41.58	40.47
CDY37776	Canola	cytosol, peroxisome, plasma membrane	40.45	40.39
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	38.11	40.36
CDY46744	Canola	cytosol, peroxisome, plasma membrane	43.03	39.91
CDX92739	Canola	plasma membrane	39.81	39.81
CDX79704	Canola	plasma membrane	42.87	39.67
CDX89963	Canola	cytosol, nucleus, plasma membrane	40.29	39.56
CDY58790	Canola	peroxisome	39.08	39.4
CDY15249	Canola	cytosol, peroxisome, plasma membrane	40.21	39.29
CDY51560	Canola	peroxisome	39.16	38.85
CDX84896	Canola	plasma membrane	32.8	38.73
CDY42770	Canola	golgi, plasma membrane, vacuole	35.13	38.41
GSMUA_Achr1P18340_001	Banana	plasma membrane	59.95	35.56
CDY65312	Canola	cytosol	37.63	33.38
CDX76106	Canola	cytosol, golgi, peroxisome	37.55	33.29
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	37.55	33.26
CDY07647	Canola	cytosol	37.47	33.19
CDY24958	Canola	mitochondrion, plasma membrane, plastid	37.31	33.19
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	37.55	33.1

Protein Annotations

MapMan:24.1.3.1.1	Gene3D:3.40.50.300	GO:A0A078EWY0	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlants:CDY04018	ProteinID:CDY04018	ProteinID:CDY04018.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00117582001	InterPro:IPR003439	InterPro:IPR011527
InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF381	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI0004EED9A1	SEG:seg	:	:	:

Description

BnaC02g37330D

Coordinates

chrLK031948:-:419949..425120

Molecular Weight (calculated)

135510.0 Da

IEP (calculated)

8.013

GRAVY (calculated)

0.083

Length

1241 amino acids

Sequence
(BLAST)

0001: MGQAEEKETG KKTVKSLRSV RSIFMHADCV DWLLMGLGFI GAVGDGFTTP LVLLITSKLM NNLGGSYLNT ETFMQNISKN SVVLLYVACG SWVVCFLEGY
0101: CWTRTGERQT ARMREKYLRA VLRQDVGYFD LHATSTSDVI TSVSSDSFLI QDVLSEKLPN FLVSASTFMG SYIVGFILLW KLALVGLPFV VLLVIPGLMY
0201: GQALISISTK IREEYNEAGF VAEQAISSVR TVYAFSGERK TISKFSTALQ GSVKLGIRQG LAKGITIGSN GITFAMWGFM SWYGSRMVMY HGAQGGTVFA
0301: VAAAVAIGGV SLGGGLSNLK YFFEAASVGE RIIEVINKVP KIDSKNSEGQ KLENIKGEVE FKHVKFVYPS RPETSIFDDF CLRVPSGKTV ALVGGSGSGK
0401: SSVISLLQRF YNPVAGEILI DGVSIDKLQV KWLRSQMGLV SQEPALFATS IKENILFGKE DASLDDVVEA AKASNAHNFI SELPNGYETQ VGERGVQMSG
0501: GQKQRIAIAR AIIKSPTILL LDEATSALDS ESERVVQDAV ENASIGRTTI LIAHHLSTIR NADIISVIQN GHGVETGSHD ELMENLDGQY ASLVRLQQIE
0601: KNDSDCQCAN MGPVSDPSKD LRSRARVSTL SRSSSANSIT GSSIVKNLSE DDKPPLPSFK RLFAMNLPEW KQALYGCISA TLFGAIQPAY PYSLGSMVSV
0701: YFLKSHDEIK EKTMIYALSF VGLAVLSLLI NISQHYNFAC MGEYLTKRIR ERMLSKVLTF EIGWFDRDEN SSGAICTRLV KDANVVRSLV GDRMALLIQT
0801: ISAVTIACTM GLVIAWRLAL VMIAVQPVII VCFYTRLVLL KNMSKKAIKA QDESSKLAAE AVSNVRTITA FSSQERIMKM LEKAQQNPRR ESIRQSWFVG
0901: IGLAMSQSLT SCMWALDFWY GGRLIEGGYI TAKALFETFM ILVSTGRVIA DAGSMTTDLA KGSDAVGSVF AVLDRYTSID PEDPDGYEPE RITGRVEFLN
1001: VGFSYPTRRD VTIFSDFSIN IDAAKSTAIV GPSGSGKSTV IGLIERFYDP VNGVVRIDGR DLRTYNLRSL RQHIALVSQE PTLFAGTIRE NIIYGRASDK
1101: IDEAEIIEAA RAANAHDFIT ALSDGYDTYC GNRGLQLSGG QKQRIAIARA MLKNPSVLLL DEATSALDSQ SERVVQDALE RVMVGRTSVV IAHRLSTIHN
1201: CDAIAVLEKG KLVEHGTHSS LLAKGSTGVY FSLVSLQRTS C

Best Arabidopsis Sequence Match ( AT3G28345.1 )
(BLAST)

0001: MGKEEEKESG RNKMNCFGSV RSIFMHADGV DWLLMGLGLI GAVGDGFTTP LVLLITSKLM NNIGGSSFNT DTFMQSISKN SVALLYVACG SWVVCFLEGY
0101: CWTRTGERQT ARMREKYLRA VLRQDVGYFD LHVTSTSDVI TSVSSDSFVI QDVLSEKLPN FLMSASTFVG SYIVGFILLW RLAIVGLPFI VLLVIPGLMY
0201: GRALISISRK IREEYNEAGF VAEQAISSVR TVYAFSGERK TISKFSTALQ GSVKLGIKQG LAKGITIGSN GITFAMWGFM SWYGSRMVMY HGAQGGTVFA
0301: VAAAIAIGGV SLGGGLSNLK YFFEAASVGE RIMEVINRVP KIDSDNPDGH KLEKIRGEVE FKNVKFVYPS RLETSIFDDF CLRVPSGKTV ALVGGSGSGK
0401: STVISLLQRF YDPLAGEILI DGVSIDKLQV KWLRSQMGLV SQEPALFATT IKENILFGKE DASMDDVVEA AKASNAHNFI SQLPNGYETQ VGERGVQMSG
0501: GQKQRIAIAR AIIKSPTILL LDEATSALDS ESERVVQEAL ENASIGRTTI LIAHRLSTIR NADVISVVKN GHIVETGSHD ELMENIDGQY STLVHLQQIE
0601: KQDINVSVKI GPISDPSKDI RNSSRVSTLS RSSSANSVTG PSTIKNLSED NKPQLPSFKR LLAMNLPEWK QALYGCISAT LFGAIQPAYA YSLGSMVSVY
0701: FLTSHDEIKE KTRIYALSFV GLAVLSFLIN ISQHYNFAYM GEYLTKRIRE RMLSKVLTFE VGWFDRDENS SGAICSRLAK DANVVRSLVG DRMALVVQTV
0801: SAVTIAFTMG LVIAWRLALV MIAVQPVIIV CFYTRRVLLK SMSKKAIKAQ DESSKLAAEA VSNVRTITAF SSQERIMKML EKAQESPRRE SIRQSWFAGF
0901: GLAMSQSLTS CTWALDFWYG GRLIQDGYIT AKALFETFMI LVSTGRVIAD AGSMTTDLAK GSDAVGSVFA VLDRYTSIDP EDPDGYETER ITGQVEFLDV
1001: DFSYPTRPDV IIFKNFSIKI EEGKSTAIVG PSGSGKSTII GLIERFYDPL KGIVKIDGRD IRSYHLRSLR RHIALVSQEP TLFAGTIREN IIYGGVSDKI
1101: DEAEIIEAAK AANAHDFITS LTEGYDTYCG DRGVQLSGGQ KQRIAIARAV LKNPSVLLLD EATSALDSQS ERVVQDALER VMVGRTSVVI AHRLSTIQNC
1201: DAIAVLDKGK LVERGTHSSL LSKGPTGIYF SLVSLQTTSG

Arabidopsis Description

ABCB15ABC transporter B family member 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHD1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.