CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89963	Canola	cytosol, nucleus, plasma membrane	98.27	98.73
AT1G02520.1	Thale cress	cytosol, peroxisome, plasma membrane	92.44	91.86
CDY51307	Canola	cytosol, peroxisome, plasma membrane	90.47	90.9
CDY15432	Canola	cytosol	87.09	90.36
CDY24379	Canola	plasma membrane	71.73	77.93
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	71.34	77.3
CDY58790	Canola	peroxisome	73.46	75.79
CDY25095	Canola	cytosol	71.89	75.7
CDX67881	Canola	cytosol	71.5	75.6
CDY27510	Canola	cytosol	71.02	75.23
CDX80072	Canola	cytosol	70.47	74.71
CDY51560	Canola	peroxisome	73.46	74.58
GSMUA_Achr8P29860_001	Banana	endoplasmic reticulum	64.57	74.14
CDY48003	Canola	cytosol	69.37	73.91
CDY37776	Canola	cytosol, peroxisome, plasma membrane	71.57	73.13
Os05t0137200-01	Rice	plasma membrane	22.6	73.03
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	74.41	72.86
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	73.31	72.62
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	73.23	72.54
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	72.44	71.48
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	71.42	70.69
Solyc06g009280.1.1	Tomato	cytosol, peroxisome, plasma membrane	70.31	69.28
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	65.28	68.4
GSMUA_Achr1P25070_001	Banana	plasma membrane	48.5	67.99
OQU77362	Sorghum	mitochondrion, plasma membrane	60.39	66.46
KXG32330	Sorghum	plastid	66.54	66.02
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	66.14	65.73
Solyc06g009290.2.1	Tomato	nucleus	72.13	65.43
TraesCS1A01G081300.1	Wheat	unclear	64.09	63.79
TraesCS1D01G082900.2	Wheat	cytosol, peroxisome, plasma membrane	64.02	63.71
TraesCS1B01G099000.1	Wheat	cytosol, peroxisome, plasma membrane	63.94	63.69
CDY35168	Canola	golgi, peroxisome, plasma membrane	54.65	63.61
HORVU1Hr1G017460.3	Barley	plasma membrane	63.78	63.13
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	66.06	62.85
GSMUA_Achr9P16700_001	Banana	plasma membrane	60.63	60.63
CDX84897	Canola	cytosol	5.51	59.32
CDX86437	Canola	cytosol	6.93	59.06
CDX86442	Canola	cytosol, mitochondrion, plastid	2.83	52.94
CDY37953	Canola	plasma membrane	43.23	44.82
CDX93393	Canola	plasma membrane	43.23	44.82
CDX86408	Canola	plasma membrane	43.62	44.79
CDY00109	Canola	plasma membrane	43.78	44.66
CDX94395	Canola	plasma membrane	42.99	44.25
CDY65012	Canola	plasma membrane	43.62	44.21
CDY20012	Canola	plasma membrane	43.62	44.21
CDX92739	Canola	plasma membrane	43.07	44.08
CDY27639	Canola	plasma membrane	41.89	43.68
CDX89380	Canola	plasma membrane	43.07	42.9
CDY42770	Canola	golgi, plasma membrane, vacuole	37.09	41.5
CDX86445	Canola	plasma membrane	40.47	41.32
CDX79704	Canola	plasma membrane	42.99	40.72
CDY46744	Canola	cytosol, peroxisome, plasma membrane	42.83	40.66
CDX85192	Canola	plasma membrane	40.39	40.43
CDY04018	Canola	plasma membrane	39.29	40.21
CDX84896	Canola	plasma membrane	33.23	40.15
CDY64952	Canola	peroxisome, plasma membrane, vacuole	27.64	35.63
CDY24958	Canola	mitochondrion, plasma membrane, plastid	37.72	34.34
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	37.87	34.33
CDY07647	Canola	cytosol	37.87	34.33
CDY65312	Canola	cytosol	37.64	34.17
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	37.8	34.09
CDX76106	Canola	cytosol, golgi, peroxisome	37.48	34.0
CDY21871	Canola	endoplasmic reticulum, plasma membrane	1.42	25.0

Protein Annotations

MapMan:24.1.3.1.1	Gene3D:3.40.50.300	GO:A0A078FQV0	UniProt:A0A078FQV0	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlants:CDY15249	ProteinID:CDY15249	ProteinID:CDY15249.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00085446001	InterPro:IPR003439	InterPro:IPR011527
InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF292	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI0004EE042D	SEG:seg	:	:	:

Description

BnaC05g01280DBnaC05g01280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQV0]

Coordinates

chrLK032052:+:668263..673317

Molecular Weight (calculated)

136853.0 Da

IEP (calculated)

8.577

GRAVY (calculated)

0.142

Length

1270 amino acids

Sequence
(BLAST)

0001: MNGGEAREGA SVSHEPSTSK TPREGEKEDT KKEKNDEKTK TVPFYKLFAF ADSIDVFLMI CGSVGAMGNG VCLPLMTLLF GDLIDSFGQN QNNKDIVDVI
0101: SKVCLKFVYL GLGTLGAAFL QVASWMITGE RQAARIRSMY LKTILRQDIG FFDVETNTGE VVGRMSGDTV LIQDAMGEKV GKFIQLVSTF VGGFALAFVK
0201: GWLLTLVMLT SIPLLAMAGA AMAIIITRAS SRGQAAYAKA ATVVEQTIGS IRTVASFTGE KQAINSYKKY ITSAYNQSIK QGFSTGLGLG VMFMVFFSSY
0301: ALAIWFGGKM IVEKGYTGGA VINVIIIVVA GSMSLGQTSP CLTAFAAGQA AAYKMFETIK RKPLIDAYDV NGKVLEDIRG DIELKDVHFS YPARPDEDIF
0401: NGFSLFIPSG ATAALVGESG SGKSTVISLI ERFYDPKSGE VLIDGVNLKE FQLKWIRSKI GLVSQEPVLF SSSIRENIAY GKDNATVEEI KAATELANAA
0501: KFIDKLPQGL DTMVGEHGTQ LSGGQKQRIA IARAILKDPR ILLLDEATSA LDAESERVVQ EALDRVMVNR TTVIVAHRLS TVRNADMIAV IHRGKMVEKG
0601: SHSELLRDPE GAYSQLIRLQ EINKGHDAKT SPGSSFRASN LKKSMEGGSV MSGGTSSVGN SGVSQRVGQE ETSQEPVPKV SLTRIAALNK TEIPVLLLGT
0701: VAAAINGAIF PLFGILISRV IEAFFKPADQ LKKDSRFWAI IFVALGVTSL IVSPVQTYLF SVAGGKLIRR IRSMCFEKAV HMEVGWFDEP QNSSGTMGAR
0801: LSADAALIRA LVGDALSLAV QNAASAASGL IIAFTASWEL AFIILVMLPL IGINGYIQVK FMKGFTADAK TKYEDASQVA NDAVGSIRTV ASFCAEEKVM
0901: QMYKKQCEGP IKDGIKQGFI SGLGFGVSFF ILFSVYATSF YAGARLVEAG RTTFNNVFQV FFALTMAAIG ISQSSTFAPD SSKAKVAAAS IFGIIDRKSK
1001: IDSSDESGTV LENVKGDIEL RHISFTYPAR PDIQIFRDLC LTIRAGKFYE KFLTVALVGE SGSGKSTVIS LLQRFYDPDS GNITLDGVEL KSLQLKWLRQ
1101: QMGLVGQEPV LFNDTIRANI AYGKGSEEAA SESEIIAAAE LANAHKFISS IQQGYDTVVG ERGIQLSGGQ KQRVAIARAI VKEPKILLLD EATSALDAES
1201: ERVVQDALDR VMVNRTTVVV AHRLSTIKNA DVIAVVKNGV IAEKGTHEKL IKIEGGVYAL LVQLHMTASN

Best Arabidopsis Sequence Match ( AT1G02520.3 )
(BLAST)

0001: MNGDGAREGD SVSHEPSTSK SPKEGEETKK EEKSEEKANT VPFYKLFAFA DSSDVLLMIC GSIGAIGNGM SLPFMTLLFG DLIDSFGKNQ NNKDIVDVVS
0101: KVCLKFVYLG LGTLGAAFLQ VACWMITGER QAARIRSTYL KTILRQDIGF FDVETNTGEV VGRMSGDTVL IQDAMGEKVG KFIQLVSTFV GGFVLAFIKG
0201: WLLTLVMLTS IPLLAMAGAA MALIVTRASS RGQAAYAKAA TVVEQTIGSI RTVASFTGEK QAINSYKKFI TSAYKSSIQQ GFSTGLGLGV MFFVFFSSYA
0301: LAIWFGGKMI LEKGYTGGAV INVIIIVVAG SMSLGQTSPC VTAFAAGQAA AYKMFETIKR KPLIDAYDVN GKVLEDIRGD IELKDVHFSY PARPDEEIFD
0401: GFSLFIPSGA TAALVGESGS GKSTVISLIE RFYDPKSGAV LIDGVNLKEF QLKWIRSKIG LVSQEPVLFS SSIMENIAYG KENATVEEIK AATELANAAK
0501: FIDKLPQGLD TMVGEHGTQL SGGQKQRIAI ARAILKDPRI LLLDEATSAL DAESERVVQE ALDRVMVNRT TVIVAHRLST VRNADMIAVI HRGKMVEKGS
0601: HSELLKDSEG AYSQLIRLQE INKDVKTSEL SSGSSFRNSN LKKSMEGTSS VGNSSRHHSL NVLGLTTGLD LGSHSQRAGQ DETGTASQEP LPKVSLTRIA
0701: ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PAHELKRDSR FWAIIFVALG VTSLIVSPTQ MYLFAVAGGK LIRRIRSMCF EKAVHMEVAW
0801: FDEPQNSSGT MGARLSADAT LIRALVGDAL SLAVQNVASA ASGLIIAFTA SWELALIILV MLPLIGINGF VQVKFMKGFS ADAKSKYEEA SQVANDAVGS
0901: IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFFILFCVY ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1001: AAASIFAIID RKSKIDSSDE TGTVLENVKG DIELRHLSFT YPARPDIQIF RDLCLTIRAG KTVALVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1101: LQLKWLRQQM GLVGQEPVLF NDTIRANIAY GKGSEEAATE SEIIAAAELA NAHKFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1201: TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIA EKGTHETLIK IEGGVYASLV QLHMTASN

Arabidopsis Description

ABCB11ABC transporter B family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.