Factsheet for GSMUA_Achr9P16700_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011703	Potato	cytosol	9.84	74.85
GSMUA_Achr8P29860_001	Banana	endoplasmic reticulum	60.16	69.08
GSMUA_Achr1P25070_001	Banana	plasma membrane	45.51	63.8
CDY48003	Canola	cytosol	58.98	62.84
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	63.54	62.7
CDY27510	Canola	cytosol	59.06	62.55
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	63.86	62.53
VIT_05s0020g00890.t01	Wine grape	cytosol, peroxisome, plasma membrane	63.46	62.29
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	62.83	62.25
CDY25095	Canola	cytosol	59.06	62.19
CDX67881	Canola	cytosol	58.74	62.11
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	62.68	62.09
CDX80072	Canola	cytosol	58.11	61.6
CDY51307	Canola	cytosol, peroxisome, plasma membrane	60.87	61.16
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	61.65	61.03
CDX89963	Canola	cytosol, nucleus, plasma membrane	60.71	61.0
AT1G02520.1	Thale cress	cytosol, peroxisome, plasma membrane	61.34	60.95
CDY15249	Canola	cytosol, peroxisome, plasma membrane	60.63	60.63
KRH02481	Soybean	plasma membrane	60.87	60.63
KRH19486	Soybean	cytosol, peroxisome, plasma membrane	60.79	60.6
Bra030503.1-P	Field mustard	cytosol, peroxisome, plasma membrane	60.63	60.34
Solyc06g009280.1.1	Tomato	cytosol, peroxisome, plasma membrane	61.18	60.28
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	60.94	60.19
Bra040475.1-P	Field mustard	cytosol	60.94	60.14
CDY15432	Canola	cytosol	57.95	60.13
Bra003490.1-P	Field mustard	cytosol, nucleus, plasma membrane	61.02	59.98
AT4G01820.1	Thale cress	peroxisome, plasma membrane, vacuole	57.95	59.89
AT3G62150.2	Thale cress	cytosol, nucleus, plasma membrane	60.94	59.72
CDY37776	Canola	cytosol, peroxisome, plasma membrane	58.43	59.69
Bra033331.1-P	Field mustard	cytosol, nucleus, plasma membrane	59.37	59.56
Bra004484.1-P	Field mustard	cytosol	60.16	59.5
CDY24379	Canola	plasma membrane	54.72	59.45
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	56.54	59.24
AT4G01830.1	Thale cress	golgi, plasma membrane, vacuole	57.32	59.19
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	54.57	59.13
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	57.09	58.9
Bra003445.1-P	Field mustard	peroxisome	57.4	58.13
CDY58790	Canola	peroxisome	56.14	57.92
GSMUA_Achr2P20180_001	Banana	plasma membrane	44.41	57.85
Solyc06g009290.2.1	Tomato	nucleus	63.46	57.57
KRH02482	Soybean	cytosol, peroxisome, plasma membrane	59.06	57.56
CDY51560	Canola	peroxisome	56.46	57.31
KRH19480	Soybean	plasma membrane	54.02	56.88
Solyc12g098840.1.1	Tomato	peroxisome	56.93	56.48
KRH02484	Soybean	plasma membrane	56.14	56.32
PGSC0003DMT400011930	Potato	peroxisome	56.38	55.63
KRH19479	Soybean	plasma membrane	55.83	54.58
Solyc11g067300.1.1	Tomato	plasma membrane	50.63	51.03
PGSC0003DMT400019085	Potato	plasma membrane	50.39	49.46
GSMUA_Achr8P24160_001	Banana	plasma membrane	39.06	44.01
GSMUA_Achr4P09980_001	Banana	plasma membrane	35.28	39.16
GSMUA_Achr4P12130_001	Banana	cytosol	39.92	37.64
GSMUA_Achr4P04430_001	Banana	cytosol, peroxisome, plasma membrane	39.84	37.34
GSMUA_Achr3P17720_001	Banana	peroxisome	34.88	35.38
GSMUA_Achr4P17010_001	Banana	peroxisome	22.13	25.43
GSMUA_Achr1P18340_001	Banana	plasma membrane	35.75	21.7

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr9G16700_001
EnsemblPlants:GSMUA_Achr9P16700_001	EnsemblPlants:GSMUA_Achr9T16700_001	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:M0U0X7
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF292	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI0002961EF6	SEG:seg	:	:	:	:

Description

ABC transporter B family member 11 [Source:GMGC_GENE;Acc:GSMUA_Achr9G16700_001]

Coordinates

chr9:-:11333785..11343873

Molecular Weight (calculated)

137900.0 Da

IEP (calculated)

7.077

GRAVY (calculated)

0.178

Length

1270 amino acids

Sequence
(BLAST)

0001: MKISNSTDAS SHEQEENNDF QSKSKQQDLK KRNNSMPYHK LFSLADTADL ALMVVGTIAA ISDGVSLPLT TVLFGDMINT FGKTRDINYI VHEVSKVALK
0101: FVYLGIANAI ASFLQVACWT ITGERQAAQI RNLYLKAILR QDIAFFDKEA NTGEVIAKIS GDTFLIQDAM GEKAGKFIQL VSSFVGGFIV AFVQGWQLTL
0201: VMLSTIPPMV LAAAVMATVL TKMAARGQTA YSEAAATVEQ TIGSIRTVVS FTGEEHAIKK YNKSLKSAYK ASVLEGLSAG VGLGATFGIV FFGYGLGIWF
0301: GSKMILKKNY TGGDVINVIF AHVQNTFFTP LDTFGGFWVI VELNIVSSQF MLIIGVLMIL LSLGQASPCT SAFAAGQVAA FKMFETINRK PEIDAYDTTG
0401: TTLDDIRGDI ELKDVCFSYP ARPHEQILKG LSLFVQGGTS VALVGESGSG KSTIISLLER FYDPQAGEIL IDGINLKEFK LRWIRGKIGL VSQEPVLLAS
0501: TIRENIAYGK DDATIDEIKA AADLASASKF IDKLPQVYNS RCDALLQCWG LDTLVGEHGI QLSGGQKQRV AIARAVLKDP RILLLDEATS ALDAESESIL
0601: QEALDHAMKN RTTVIVAHRL TTVRNANMIT VVHQGSIAEK GSHDELIKIP NGAYNQLVRL QELIQTSSQL STNRWSSIGS DIPVSRLASL NIPEIPLLLL
0701: GTIAAIISGI LLPIFGALLS SIIPRAYLFA IAGSKLIERI RAMSFDKIVH MEVGWFDKLE NSSGAIGARL SADAATVRTL VGDTLALAVQ NAATLVAGLA
0801: IAFSACWQLA LIILALAPLV GLNGWIQLKF MKGLNADAKM MFEEASQVAS DAIRNIRTVS SFTAEEKVIE LYRRKYKGPM NSIIKQGLIG GLGFGLSNIL
0901: LFCVYATGFY AGARLVKDGE TTFANVFRIL VCYVPFQNGD FCLCQTELET CKSSTLIQVF FALNFAAVGI TQYSSLAPDS AKAKSATASV FAILDRKSKI
1001: DSSDDSGTTL DLVEGNIVFD HVSFRYPTRP DVRIFHDLCF AVQSGKTVAI VGESGSGKST LLSLLQRFYD LDSGHILLDG VEIQKLKLRW LRQQMGLVSQ
1101: EPVLFNDTVR ANIAYGKGGD ATESEILAAA ESANAHQFIS GLQQGYDTLV GERGAQLSGG QKQRLAIARA IIKDPKILLF DEATSALDTE SERAVQEALE
1201: RVMINRTTIV VAHRLSTIKG ADMIAVLQDG TIVEKGKHED LINIKDGFYA TLWRHHSPYK HEKSRTPSLQ

Best Arabidopsis Sequence Match ( AT3G62150.3 )
(BLAST)

0001: MDSVIESEEG LKVDSPNRAD AETSNSKIHE EDEKELKTES DLKEEKKKTE KNKQEEDEKT KTVPFHKLFA FADSFDIILM ILGTIGAVGN GLGFPIMTIL
0101: FGDVIDVFGQ NQNSSDVSDK IAKVALKFVY LGLGTLVAAL LQVSGWMISG ERQAGRIRSL YLQTILRQDI AFFDVETNTG EVVGRMSGDT VLIQDAMGEK
0201: VGKAIQLVST FIGGFVIAFT EGWLLTLVMV SSIPLLVMSG AALAIVISKM ASRGQTSYAK AAVVVEQTVG SIRTVASFTG EKQAISNYNK HLVSAYRAGV
0301: FEGASTGLGL GTLNIVIFCT YALAVWYGGK MILEKGYTGG QVLIIIFAVL TGSMSLGQAS PCLSAFAAGQ AAAYKMFEAI KRKPEIDASD TTGKVLDDIR
0401: GDIELNNVNF SYPARPEEQI FRGFSLSISS GSTVALVGQS GSGKSTVVSL IERFYDPQSG EVRIDGINLK EFQLKWIRSK IGLVSQEPVL FTSSIKENIA
0501: YGKENATVEE IRKATELANA SKFIDKLPQG LDTMVGEHGT QLSGGQKQRI AVARAILKDP RILLLDEATS ALDAESERIV QEALDRIMVN RTTVVVAHRL
0601: STVRNADMIA VIHQGKIVEK GSHSELLRDP EGAYSQLIRL QEDTKQTEDS TDEQKLSMES MKRSSLRKSS LSRSLSKRSS SFSMFGFPAG IDTNNEAIPE
0701: KDIKVSTPIK EKKVSFFRVA ALNKPEIPML ILGSIAAVLN GVILPIFGIL ISSVIKAFFK PPEQLKSDTR FWAIIFMLLG VASMVVFPAQ TIFFSIAGCK
0801: LVQRIRSMCF EKVVRMEVGW FDETENSSGA IGARLSADAA TVRGLVGDAL AQTVQNLASV TAGLVIAFVA SWQLAFIVLA MLPLIGLNGY IYMKFMVGFS
0901: ADAKRMYEEA SQVANDAVGS IRTVASFCAE EKVMKMYKKK CEGPMRTGIR QGIVSGIGFG VSFFVLFSSY AASFYAGARL VDDGKTTFDS VFRVFFALTM
1001: AAVAISQSSS LSPDSSKASN AAASIFAVID RESKIDPSDE SGRVLDNVKG DIELRHISFK YPSRPDVQIF QDLCLSIRAG KTIALVGESG SGKSTVIALL
1101: QRFYDPDSGQ ITLDGVEIKT LQLKWLRQQT GLVSQEPVLF NETIRANIAY GKGGDATETE IVSAAELSNA HGFISGLQQG YDTMVGERGV QLSGGQKQRV
1201: AIARAIVKDP KVLLLDEATS ALDAESERVV QDALDRVMVN RTTVVVAHRL STIKNADVIA VVKNGVIVEK GKHETLINIK DGVYASLVQL HLSAST

Arabidopsis Description

ABCB21ABC transporter B family member 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Q9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.