Factsheet for PGSC0003DMT400011703

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0137200-01	Rice	plasma membrane	76.05	32.32
GSMUA_Achr1P25070_001	Banana	plasma membrane	78.44	14.46
PGSC0003DMT400011930	Potato	peroxisome	98.8	12.82
Solyc12g098840.1.1	Tomato	peroxisome	97.01	12.66
GSMUA_Achr8P29860_001	Banana	endoplasmic reticulum	80.24	12.12
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	80.84	11.14
KRH19480	Soybean	plasma membrane	80.24	11.11
OQU77362	Sorghum	mitochondrion, plasma membrane	76.05	11.01
VIT_05s0020g00890.t01	Wine grape	cytosol, peroxisome, plasma membrane	83.23	10.74
KRH19486	Soybean	cytosol, peroxisome, plasma membrane	81.44	10.68
KRH02481	Soybean	plasma membrane	81.44	10.67
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	81.44	10.57
KRH02482	Soybean	cytosol, peroxisome, plasma membrane	81.44	10.44
KRH19479	Soybean	plasma membrane	79.04	10.16
KRH02484	Soybean	plasma membrane	76.65	10.11
TraesCS1A01G081300.1	Wheat	unclear	75.45	9.87
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	75.45	9.86
GSMUA_Achr9P16700_001	Banana	plasma membrane	74.85	9.84
KXG32330	Sorghum	plastid	74.85	9.77
TraesCS1B01G099000.1	Wheat	cytosol, peroxisome, plasma membrane	74.25	9.73
TraesCS1D01G082900.2	Wheat	cytosol, peroxisome, plasma membrane	74.25	9.72
PGSC0003DMT400007960	Potato	plasma membrane	72.46	9.59
HORVU1Hr1G017460.3	Barley	plasma membrane	73.65	9.59
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	75.45	9.44
PGSC0003DMT400034908	Potato	plasma membrane	68.26	9.05
PGSC0003DMT400045176	Potato	peroxisome	62.28	8.27
PGSC0003DMT400049576	Potato	plasma membrane	62.28	8.26
PGSC0003DMT400048379	Potato	golgi, peroxisome, plasma membrane	55.69	8.18
PGSC0003DMT400003590	Potato	plasma membrane	61.08	8.17
PGSC0003DMT400019085	Potato	plasma membrane	62.87	8.11
PGSC0003DMT400013988	Potato	plasma membrane	58.68	7.99
PGSC0003DMT400027962	Potato	golgi, plasma membrane, vacuole	59.28	7.89
PGSC0003DMT400009924	Potato	peroxisome	61.68	7.73
PGSC0003DMT400069516	Potato	peroxisome	54.49	7.67
PGSC0003DMT400058977	Potato	plastid	61.08	6.68

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
UniProt:M0ZZZ5	InterPro:P-loop_NTPase	PFAM:PF00005	EnsemblPlantsGene:PGSC0003DMG400004595	PGSC:PGSC0003DMG400004595	EnsemblPlants:PGSC0003DMT400011703
ScanProsite:PS00211	PFscan:PS50893	PANTHER:PTHR24221	PANTHER:PTHR24221:SF292	SUPFAM:SSF52540	UniParc:UPI000296E7F9
SEG:seg	:	:	:	:	:

Description

Multidrug/pheromone exporter, MDR family, ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400004595]

Coordinates

chr12:+:59678346..59679244

Molecular Weight (calculated)

17799.3 Da

IEP (calculated)

6.269

GRAVY (calculated)

-0.015

Length

167 amino acids

Sequence
(BLAST)

001: MGLVSQEPIL FNDTIRANIA YGKESDATEA EILAAAELAN AHNFISGLQQ GYETVVGERG IQLSGGQKQR VAIARAIVKC PKILLLDEAT SALDAESEKV
101: VQDALDRVRS GRTTVVVAHR LSTIKGADVI AVIKDGVIVE KGNHETLVNR QDGIYASLVS KSASTMK

Best Arabidopsis Sequence Match ( AT2G47000.1 )
(BLAST)

0001: MASESGLNGD PNILEEVSET KRDKEEEEEV KKTEKKDEEH EKTKTVPFYK LFAFADSFDF LLMILGTLGS IGNGLGFPLM TLLFGDLIDA FGENQTNTTD
0101: KVSKVALKFV WLGIGTFAAA FLQLSGWMIS GERQAARIRS LYLKTILRQD IAFFDIDTNT GEVVGRMSGD TVLIQDAMGE KVGKAIQLLA TFVGGFVIAF
0201: VRGWLLTLVM LSSIPLLVMA GALLAIVIAK TASRGQTAYA KAATVVEQTI GSIRTVASFT GEKQAISNYN KHLVTAYKAG VIEGGSTGLG LGTLFLVVFC
0301: SYALAVWYGG KLILDKGYTG GQVLNIIIAV LTGSMSLGQT SPCLSAFAAG QAAAYKMFET IERRPNIDSY STNGKVLDDI KGDIELKDVY FTYPARPDEQ
0401: IFRGFSLFIS SGTTVALVGQ SGSGKSTVVS LIERFYDPQA GDVLIDGINL KEFQLKWIRS KIGLVSQEPV LFTASIKDNI AYGKEDATTE EIKAAAELAN
0501: ASKFVDKLPQ GLDTMVGEHG TQLSGGQKQR IAVARAILKD PRILLLDEAT SALDAESERV VQEALDRIMV NRTTVVVAHR LSTVRNADMI AVIHQGKIVE
0601: KGSHTELLKD PEGAYSQLIR LQEEKKSDEN AAEEQKMSSI ESFKQSSLRK SSLGRSLSKG GSSRGNSSRH SFNMFGFPAG IDGNVVQDQE EDDTTQPKTE
0701: PKKVSIFRIA ALNKPEIPVL ILGSISAAAN GVILPIFGIL ISSVIKAFFQ PPKKLKEDTS FWAIIFMVLG FASIIAYPAQ TFFFAIAGCK LVQRIRSMCF
0801: EKVVHMEVGW FDEPENSSGT IGARLSADAA TIRGLVGDSL AQTVQNLSSI LAGLIIAFLA CWQLAFVVLA MLPLIALNGF LYMKFMKGFS ADAKKMYGEA
0901: SQVANDAVGS IRTVASFCAE DKVMNMYSKK CEGPMKNGIR QGIVSGIGFG FSFFVLFSSY AASFYVGARL VDDGKTTFDS VFRVFFALTM AAMAISQSSS
1001: LSPDSSKADV AAASIFAIMD RESKIDPSVE SGRVLDNVKG DIELRHVSFK YPARPDVQIF QDLCLSIRAG KTVALVGESG SGKSTVIALL QRFYDPDSGE
1101: ITLDGVEIKS LRLKWLRQQT GLVSQEPILF NETIRANIAY GKGGDASESE IVSSAELSNA HGFISGLQQG YDTMVGERGI QLSGGQKQRV AIARAIVKDP
1201: KVLLLDEATS ALDAESERVV QDALDRVMVN RTTIVVAHRL STIKNADVIA VVKNGVIVEK GKHDTLINIK DGVYASLVQL HLTAAS

Arabidopsis Description

ABCB4ABC transporter B family member 4 [Source:UniProtKB/Swiss-Prot;Acc:O80725]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.