Factsheet for PGSC0003DMT400058977

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g00750.t01	Wine grape	peroxisome, plastid	69.55	67.34
KRH06234	Soybean	peroxisome, plastid	65.68	66.2
TraesCS4B01G298100.1	Wheat	mitochondrion, plasma membrane	52.91	61.49
PGSC0003DMT400011703	Potato	cytosol	6.68	61.08
Os03t0181750-00	Rice	plasma membrane	38.11	60.31
TraesCS4D01G296900.1	Wheat	peroxisome	56.06	57.07
TraesCS4A01G006900.1	Wheat	peroxisome	55.66	56.86
Bra032855.1-P	Field mustard	cytosol	4.39	56.78
Zm00001d004442_P001	Maize	plastid	54.35	54.71
HORVU4Hr1G077060.1	Barley	mitochondrion, peroxisome, plastid	49.51	54.35
KXG25805	Sorghum	peroxisome, plastid	54.94	54.2
Os03t0181675-00	Rice	cytosol, nucleus, peroxisome, plastid	17.09	44.77
PGSC0003DMT400003590	Potato	plasma membrane	35.43	43.31
PGSC0003DMT400048379	Potato	golgi, peroxisome, plasma membrane	30.65	41.16
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	34.38	40.79
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	32.02	40.35
PGSC0003DMT400007960	Potato	plasma membrane	33.2	40.17
PGSC0003DMT400034908	Potato	plasma membrane	32.74	39.71
PGSC0003DMT400011930	Potato	peroxisome	33.2	39.39
PGSC0003DMT400009924	Potato	peroxisome	34.25	39.23
PGSC0003DMT400045176	Potato	peroxisome	32.29	39.22
PGSC0003DMT400027962	Potato	golgi, plasma membrane, vacuole	31.83	38.76
PGSC0003DMT400049576	Potato	plasma membrane	31.89	38.68
PGSC0003DMT400013988	Potato	plasma membrane	30.84	38.42
PGSC0003DMT400019085	Potato	plasma membrane	31.43	37.09
PGSC0003DMT400069516	Potato	peroxisome	27.96	36.0

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
InterPro:IPR011527	InterPro:IPR036640	UniProt:M1C3L8	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664
EnsemblPlantsGene:PGSC0003DMG400022905	PGSC:PGSC0003DMG400022905	EnsemblPlants:PGSC0003DMT400058977	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF283	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI00029694F5	SEG:seg	:	:	:	:

Description

Multidrug/pheromone exporter, MDR family, ABC transporter family [Source:PGSC_GENE;Acc:PGSC0003DMG400022905]

Coordinates

chr3:+:61265905..61272730

Molecular Weight (calculated)

167898.0 Da

IEP (calculated)

9.074

GRAVY (calculated)

-0.062

Length

1527 amino acids

Sequence
(BLAST)

0001: MAHSEFSSST TRQRRHTTPV VSQQPSTSFS MSMTSSHNFS RARNPTPASP FASDNDRSWQ GELSWQFDPT GWRDNRNLSA ALSPWTAADT SFTSAANGSR
0101: IFRRSANDYY LSRTTNSVFQ NFINPSYDHS YSGLQPSGRL ELQSFDSRAN ENSYTSRNHV SREYKGKPRK SPRLTTITEG TSAGKSGPLA VKDELQSIDY
0201: DRIEDFERQF QVDGSNAHNH GIVRGHHGHV NHMGHSFNTD TSDFDVKCVD HVYEEQSHHV QHSMQSNLHL YGNDLYDDTD KNHAVHDEED DTAAPKPVGL
0301: LSLFKYSTKL DIVLLLLGCI GALINGGSLP WYSYLFGNFV NKIALEKDKD QMVKDVGMVC VLMTGLSVVV MVGAYLETTC WRLVGERSAH RIRTKYLRAV
0401: LRQDIGFFDT ELNTGEIMHG ISSDVAQIQE VMGEKMAHFV HHIFTFINGY AVGFRRSWKV SLAVFAVTPL SMFCGLAYKA IYVGLTLKEE ESYRKAGSIA
0501: EQAMSSIRTV TAFVAEDYLD AKYVESLQKS GRLGAKVGFA KGAGIGVIYL VTYATWALAF WYGSILVAKG ELSGGAAIAC FFGVNVGGRG LALSLSYFAQ
0601: FAQGTVAATR VFEVIDRVPE IDPYSLEGRR LSTIRGKIEF KCVTFAYPAR PTVQILQSLN LVVPASRTLA LVGISGGGKS TIFALIERFY DPLQGLITLD
0701: GHDIRTLQVK WLRTQIGMVG QEPVLFGTSI LENVMMGKEN ATKKEAMAAC VAANAHSFIS RLPEGYDTQV GDRGTQLSGG QKQRIALARA MIKDPKILLL
0801: DEPTSALDPE SEAIVQRAID KISKDRTTLV IAHRLATVRN AHTIVVLDHG SVVETGNHDQ LMEKAGAYFG LIKLASEAVP KPMSNLGDVP KENEFSAYEK
0901: SNYDVARVKG AYEISRSKYL ESMQEGSHIE GEEGEQAKMK SYRLSELWNL QRPELIVLLV GLFMGMLAGA ILSLYPLVLG QALKVYFYTD MSRLKREVGY
1001: LCLILVGLGF GCIFAMVGQQ GFCGWAGTKL TMRVRSFLFK SILKQEPGWF DLDENSTGVL VSRLSVDCVS FRSVLGDRFS VLLMGLSSAA VGLGVSFKLE
1101: WRLALLATAV TPFTLGASYL TLIINVGGKL DNSSYAKASS IAAGAVSNIR TVATFSTQEQ IVKSFEKALS EPKRTSVRRS QMLGLALGLS QGAMYGAYTL
1201: TLWFGAYLVK QGYTNFGDVY KIFLILVLSS FAVGQLAGLA PDTSMASTAI PAVLSIINRK PSISTDRLKG KKIEISKPFD IEFRTVTFAY PSRPDVIVLR
1301: NFTLKIRGGT MVALVGASGS GKSTVIWMIQ RFYDPIQGRV LMEGVDLREL NLKWLRRQTA LVSQEPALFA GTIRENIAFG KPNATWAEIE EAAKEAHIHK
1401: FISGLPQGYE TEVGQSGVQL SGGQKQRIAI ARAILKKSKL LLLDEASSAL DLESEKHVQD ALRKISKRAT TVVVAHRLST IREASVIAVV KEGTIAEYGS
1501: HDKLMASHLD GLYSNLVRAE TEALAFS

Best Arabidopsis Sequence Match ( AT1G02520.2 )
(BLAST)

0001: MNGDGAREGD SVSHEPSTSK SPKEGEETKK EEKSEEKANT VPFYKLFAFA DSSDVLLMIC GSIGAIGNGM SLPFMTLLFG DLIDSFGKNQ NNKDIVDVVS
0101: KVCLKFVYLG LGTLGAAFLQ VACWMITGER QAARIRSTYL KTILRQDIGF FDVETNTGEV VGRMSGDTVL IQDAMGEKVG KFIQLVSTFV GGFVLAFIKG
0201: WLLTLVMLTS IPLLAMAGAA MALIVTRASS RGQAAYAKAA TVVEQTIGSI RTVASFTGEK QAINSYKKFI TSAYKSSIQQ GFSTGLGLGV MFFVFFSSYA
0301: LAIWFGGKMI LEKGYTGGAV INVIIIVVAG SMSLGQTSPC VTAFAAGQAA AYKMFETIKR KPLIDAYDVN GKVLEDIRGD IELKDVHFSY PARPDEEIFD
0401: GFSLFIPSGA TAALVGESGS GKSTVISLIE RFYDPKSGAV LIDGVNLKEF QLKWIRSKIG LVSQEPVLFS SSIMENIAYG KENATVEEIK AATELANAAK
0501: FIDKLPQGLD TMVGEHGTQL SGGQKQRIAI ARAILKDPRI LLLDEATSAL DAESERVVQE ALDRVMVNRT TVIVAHRLST VRNADMIAVI HRGKMVEKGS
0601: HSELLKDSEG AYSQLIRLQE INKDVKTSEL SSGSSFRNSN LKKSMEGTSS VGNSSRHHSL NVLGLTTGLD LGSHSQRAGQ DETGTASQEP LPKVSLTRIA
0701: ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PAHELKRDSR FWAIIFVALG VTSLIVSPTQ MYLFAVAGGK LIRRIRSMCF EKAVHMEVAW
0801: FDEPQNSSGT MGARLSADAT LIRALVGDAL SLAVQNVASA ASGLIIAFTA SWELALIILV MLPLIGINGF VQVKFMKGFS ADAKSKYEEA SQVANDAVGS
0901: IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFFILFCVY ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1001: AAASIFAIID RKSKIDSSDE TGTVLENVKG DIELRHLSFT YPARPDIQIF RDLCLTIRAG KTVALVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1101: LQLKWLRQQM GLVGQEPVLF NDTIRANIAY GKGSEEAATE SEIIAAAELA NAHKFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1201: TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIA EKGTHETLIK IEGGVYASLV QLHMTASN

Arabidopsis Description

ABCB11ABC transporter B family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.