CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 4
mitochondrion 1
peroxisome 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004442_P001	Maize	plastid	87.27	89.06
TraesCS4B01G298100.1	Wheat	mitochondrion, plasma membrane	70.41	82.95
Os03t0181750-00	Rice	plasma membrane	50.52	81.04
TraesCS4A01G006900.1	Wheat	peroxisome	77.58	80.33
TraesCS4D01G296900.1	Wheat	peroxisome	77.84	80.33
HORVU4Hr1G077060.1	Barley	mitochondrion, peroxisome, plastid	69.25	77.07
Os03t0181675-00	Rice	cytosol, nucleus, peroxisome, plastid	26.81	71.18
Bra032855.1-P	Field mustard	cytosol	4.52	59.32
KRH06234	Soybean	peroxisome, plastid	54.01	55.18
VIT_09s0002g00750.t01	Wine grape	peroxisome, plastid	56.07	55.04
PGSC0003DMT400058977	Potato	plastid	54.2	54.94
OQU84543	Sorghum	endoplasmic reticulum, plasma membrane	32.36	40.53
EES12287	Sorghum	cytosol, peroxisome, plasma membrane	32.88	40.33
EES12952	Sorghum	cytosol, peroxisome, plasma membrane	32.82	40.13
EES05688	Sorghum	plasma membrane	31.78	39.05
OQU77362	Sorghum	mitochondrion, plasma membrane	28.88	38.73
EES05229	Sorghum	plasma membrane	30.56	38.02
KXG32330	Sorghum	plastid	31.33	37.89
KXG33192	Sorghum	cytosol	30.81	37.59
EES01319	Sorghum	cytosol	29.91	36.34
KXG35311	Sorghum	plasma membrane	29.46	36.33
KXG32655	Sorghum	peroxisome	29.59	35.48
OQU79902	Sorghum	nucleus, peroxisome, plasma membrane	27.39	33.65
OQU80682	Sorghum	plasma membrane	32.56	32.71
OQU79903	Sorghum	peroxisome	26.61	32.52
KXG34231	Sorghum	cytosol, plasma membrane, vacuole	28.29	31.26
EER92449	Sorghum	plasma membrane	27.58	30.22
OQU78384	Sorghum	plasma membrane	30.36	24.92

Protein Annotations

MapMan:24.1.3.1.1	Gene3D:3.40.50.300	UniProt:A0A1B6PJF4	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
InterPro:IPR011527	InterPro:IPR036640	EnsemblPlants:KXG25805	ProteinID:KXG25805	ProteinID:KXG25805.1	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221
PANTHER:PTHR24221:SF292	SMART:SM00382	EnsemblPlantsGene:SORBI_3006G014800	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI00081AC05F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:2195405..2200776

Molecular Weight (calculated)

165631.0 Da

IEP (calculated)

8.983

GRAVY (calculated)

0.016

Length

1548 amino acids

Sequence
(BLAST)

0001: MDDFSFSRSG THLQPPPRRQ RQPAAAAAAA GAHSPFSTTT DNSATSFATT TATPRGILRR RRGGLDDTSW QSSVSWQPAD TSWAQPHGLG AAVGPWAPAG
0101: SDAASRRGPA LFRRTARDYY LSKRSTRLMY RDRSSATTHQ SRSVAASAAA AGGGNKRLEL QSVVTDASRA IVVAPNTSFA SNDDIVSTAT TAITGAGGRG
0201: GGGGGGSGNN AMVKYRDTYM SREVSFSRDN HDKLYVPARR GERDAASFGY DISVTSYSRS QYYDGDGDDY DFDLYDDDDD DDDGEIEVRI GKPVSIAGLF
0301: KYSAPLDIVL LVLGCIGAMI NGGSLPWYSY LFGNFINKVV NSDKPQMMKD VKQISFYMLF LAAAVVIGAY LEIMCWRMIG ERSALRIRRE YLKAVLRQEI
0401: GFFDTEVSTG EVMQSISSDV AQIQDVMGDK MAGFVHHVFT FIFGYVVGFI KSWKIALAVF AATPVMMSCG LAYKAIYGGL TAKDEASYKR AGSVAQQAIF
0501: SIRTVLSFVM EDRLADRYAE WLNRAAPIGI KLGFAKGAGM GVIYLVTYSQ WALALWLGSR LVATGDIKGG DAIACFFGVM VGGRGLALSL SYFAQFAQGR
0601: VAAGRVFEIV DRVPDIDAYG GAGRSLSSVR GRIEFKDVEF AYPSRPEAMI LYNLNLTIPA SKMVALVGVS GGGKSTMFAL LERFYDPTRG IITLDGHDLS
0701: SLNLRWLRSQ MGLVGQEPVL FATSIVENVM MGKENATRQE AIAACAKANA HTFVLGLPDG YDTQVGDRGT QLSGGQKQRI ALARAIIRDP RILLLDEPTS
0801: ALDAESEAVV QQSIERLSVG RTVVVIAHRL ATVRNADTIA VLDRGAVVES GRHDDLVARG GPYAALVKLA SDSGRSSSDD AASGAPARKS PAAVGGGTGY
0901: NSFTDDSGVY DDDILSSVSR SRYGGGARRT FPREAEVDIR AKTTKDDDDA AAAGDSKVVS VSEIWKLQRQ EGPLLILGFL MGINAGAVFS VFPLLLGQAV
1001: AVYFDADTSK MKRQVGALAM AMVGLGVACI LAMTGQQGLC GWAGARLTMR VRDRLFRAIM RQEPAWFDEE DNAMGILVTR LARDAVAFRS MFGDRYAVLL
1101: MAVGSAGVGL GICFALDWRL TLVAMACTPL TLGASYLNLL INVGAKTDDD GAYARASSIA AGAVSNVRTV AALCAQGNIV GTFNRALDVP VSKARRRSQV
1201: MGVILGLSQG AMYGAYTVTL WAGALFINKD QSKFGDVSKI FLILVLSSFS VGQLAGLAPD TSGAAVAIAG ILSILNRRPT ITDDGSSGGK RRTIKDGKPM
1301: DVELKSVVFA YPSRPEVRVL NEFSVRVKAG STVAVVGASG SGKSTVVWMV QRFYDPVDGK VMVGGIDVRE LDLKWLRGEC AMVGQEPALF SGSIRENIGF
1401: GNAKASWAEI EEAAKEANIH KFIAGLPQGY ETQVGESGVQ LSGGQKQRIA IARAIVKQSR ILLLDEASSA LDLESEKQVQ EALRKVARRA TTIVVAHRLS
1501: TIRDADRVAV VSNGKVAEFG SHQELLATHR DGMYAAMVKA EVEAQAFA

Best Arabidopsis Sequence Match ( AT1G02520.2 )
(BLAST)

0001: MNGDGAREGD SVSHEPSTSK SPKEGEETKK EEKSEEKANT VPFYKLFAFA DSSDVLLMIC GSIGAIGNGM SLPFMTLLFG DLIDSFGKNQ NNKDIVDVVS
0101: KVCLKFVYLG LGTLGAAFLQ VACWMITGER QAARIRSTYL KTILRQDIGF FDVETNTGEV VGRMSGDTVL IQDAMGEKVG KFIQLVSTFV GGFVLAFIKG
0201: WLLTLVMLTS IPLLAMAGAA MALIVTRASS RGQAAYAKAA TVVEQTIGSI RTVASFTGEK QAINSYKKFI TSAYKSSIQQ GFSTGLGLGV MFFVFFSSYA
0301: LAIWFGGKMI LEKGYTGGAV INVIIIVVAG SMSLGQTSPC VTAFAAGQAA AYKMFETIKR KPLIDAYDVN GKVLEDIRGD IELKDVHFSY PARPDEEIFD
0401: GFSLFIPSGA TAALVGESGS GKSTVISLIE RFYDPKSGAV LIDGVNLKEF QLKWIRSKIG LVSQEPVLFS SSIMENIAYG KENATVEEIK AATELANAAK
0501: FIDKLPQGLD TMVGEHGTQL SGGQKQRIAI ARAILKDPRI LLLDEATSAL DAESERVVQE ALDRVMVNRT TVIVAHRLST VRNADMIAVI HRGKMVEKGS
0601: HSELLKDSEG AYSQLIRLQE INKDVKTSEL SSGSSFRNSN LKKSMEGTSS VGNSSRHHSL NVLGLTTGLD LGSHSQRAGQ DETGTASQEP LPKVSLTRIA
0701: ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PAHELKRDSR FWAIIFVALG VTSLIVSPTQ MYLFAVAGGK LIRRIRSMCF EKAVHMEVAW
0801: FDEPQNSSGT MGARLSADAT LIRALVGDAL SLAVQNVASA ASGLIIAFTA SWELALIILV MLPLIGINGF VQVKFMKGFS ADAKSKYEEA SQVANDAVGS
0901: IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFFILFCVY ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1001: AAASIFAIID RKSKIDSSDE TGTVLENVKG DIELRHLSFT YPARPDIQIF RDLCLTIRAG KTVALVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1101: LQLKWLRQQM GLVGQEPVLF NDTIRANIAY GKGSEEAATE SEIIAAAELA NAHKFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1201: TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIA EKGTHETLIK IEGGVYASLV QLHMTASN

Arabidopsis Description

ABCB11ABC transporter B family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.