Factsheet for VIT_09s0002g00750.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

plastid 4
peroxisome 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058977	Potato	plastid	67.34	69.55
KRH06234	Soybean	peroxisome, plastid	65.31	67.99
TraesCS4B01G298100.1	Wheat	mitochondrion, plasma membrane	52.57	63.09
Os03t0181750-00	Rice	plasma membrane	38.36	62.69
Bra032855.1-P	Field mustard	cytosol	4.38	58.47
TraesCS4D01G296900.1	Wheat	peroxisome	55.61	58.47
TraesCS4A01G006900.1	Wheat	peroxisome	55.42	58.46
Zm00001d004442_P001	Maize	plastid	54.34	56.49
KXG25805	Sorghum	peroxisome, plastid	55.04	56.07
HORVU4Hr1G077060.1	Barley	mitochondrion, peroxisome, plastid	49.33	55.93
Os03t0181675-00	Rice	cytosol, nucleus, peroxisome, plastid	16.55	44.77
VIT_10s0003g02550.t01	Wine grape	cytosol, nucleus, peroxisome	14.46	41.83
VIT_10s0003g02540.t01	Wine grape	plasma membrane	32.47	41.59
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	32.91	41.52
VIT_18s0001g14660.t01	Wine grape	peroxisome, plasma membrane, vacuole	31.9	41.23
VIT_14s0066g02320.t01	Wine grape	peroxisome	29.93	40.8
VIT_11s0016g03160.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	31.64	40.73
VIT_10s0003g02570.t01	Wine grape	plasma membrane	31.71	40.36
VIT_02s0012g01660.t01	Wine grape	plasma membrane	31.77	40.31
VIT_01s0137g00350.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	31.52	39.7
VIT_05s0020g00890.t01	Wine grape	cytosol, peroxisome, plasma membrane	31.9	38.87
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	31.83	38.7
VIT_17s0000g09760.t01	Wine grape	plasma membrane	29.23	38.51
VIT_10s0003g02580.t01	Wine grape	plasma membrane	30.82	38.42
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	32.97	38.4
VIT_19s0085g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	29.74	38.29
VIT_16s0098g00570.t01	Wine grape	cytosol, plasma membrane, vacuole	27.77	36.87
VIT_13s0019g00310.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	27.46	33.31
VIT_06s0004g04100.t01	Wine grape	cytosol	28.28	31.74

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CCB59261	ProteinID:CCB59261.1	UniProt:F6HXQ4	EMBL:FN596494
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24221	PANTHER:PTHR24221:SF292	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI000210A205	ArrayExpress:VIT_09s0002g00750	EnsemblPlantsGene:VIT_09s0002g00750	EnsemblPlants:VIT_09s0002g00750.t01	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:503921..510003

Molecular Weight (calculated)

173680.0 Da

IEP (calculated)

7.620

GRAVY (calculated)

-0.140

Length

1577 amino acids

Sequence
(BLAST)

0001: MADSSFETDF SLSGRSGNYR RRHRPTPVRS NHASSSFTWF SPLDMSQNYY PRRLRHHPSP ASPFSTDNDL SWQGELSWQF EPSGWQDNRN LGAVLSPWIA
0101: TPSSDRHQSF QRSANDYYLS RTYGGFQSFT NPYYEYSGYG SVPSKRLELQ SYVDGDHGSS FFGRHYTSGE YSRSHGFPNL GSIKEGSPGH HGPLADKDEL
0201: SLIKYTSPEE SELQISLFET DLGHHQHEDP RWFSVSHAYM DVEDNSVNVS HHHHDGGHRH IKQEVDNLDN GLHSFSPSFE KHGHHGHGYH DHGVWKSTSH
0301: HYDTDEGYND NDQDSAYDED EDDEDDGMAP RSVGLFSLFR YSTKSDILLV ILGCLGALIN GGSLPWYSLL FGNFVNKIAK EPDSNDKTEM MKDVQQVRVP
0401: LFFINKSAYG WTSSNSDIVL ITGLAEITCW RIVGERSSQR IRTKYLRAVL RQDIGFFDTQ ISTGNIMHGI SSDVAQIQEV MGEKMAHFIH HVFTFICGYA
0501: VGFWRSWKVS LVVLSVIPLM MFCGIAYKAI YVGLTAKEEV SYRIAGSVAE QAISSIRTVF SFVAEDHLAE RYAELLQKSV PFGVKLGFAK GAGMGVIYLV
0601: TYSTWALAFW YGSILVARGE ISGGAAIACF FGVNLGGRGL ALSLSYFAQF AQGTVAASRV FEIIDRVPEI DPYSPEGRKL PSIRGRIEFK GVTFAYPSRP
0701: TAAILRSLNL EVPSSKTLAL VGSSGGGKST IFALIERFYD PVKGIITLDG HDIRTLQVKW LRGQIGMVGQ EPVLFTTSIL ENVMMGKENA TKKEAIAACV
0801: AANAHSFISG LPQGYDTQVG DRGTQLSGGQ KQRIALARAL TTDPRILLLD EPTSALDPES ESVVQQAIDK ISAGRTTLVI AHRLATVRNA HTIVVLNHGA
0901: VVETGNHHKL MEKSGAYYNL VKLASEAVSK PLSKQDGSII KATKLPSYER SVYEVSKSKY MNEASRSKYL TSMQEQYKEE EEEKPEPKPG KVLVSEIFKL
1001: QRPELLMLLL GFLLGMHAGA ILSIFPFILG LALQIYFGDD TSKMKREVGV LSLVIVGLGF GCVITLVGQQ GFCGWAGTKL TKRVRDRLFR SILKQEPGWF
1101: DFDDNSTGVL VSRLSIDCVT FRSVLGDRFS VLLTGLSSAA VGLGISFFLD WRLTLLAAAL TPLTLGASYF SLIINVGPRL DNSSYARASN IAAGAVSNIR
1201: TVTTFSAQQQ LVHTFDQALS EPKKKSVKRS QVLGLALGFS QGAMYGAYTL TLWFGTYLIK EDKANFGDVF KIFLILVMSS FSVGQLAGLA PDTSMAATAV
1301: PAVFSIINRR PMISSDGEKG RKVERSKPVD VELKMVTFAY PSRPEVTVLR EFCLKVKGGS MVALVGGSGS GKSTVVWLIQ RFYDPNQGKV LMGGVDIKEM
1401: NVKWLRRQIA LVGQEPALFA GSIRENIAFG NPNASWAEIE EAANEAYIHK FISSLPQGYE TQVGESGAQL SGGQKQRIAI ARAILKKSKV LLLDEASSAL
1501: DLESEKHVQD ALRKVSERAT TIVVAHRLST IREAHMIAVV KDGAVTEYGS HDTLLASHLN GVYASLVRAE TEASAFS

Best Arabidopsis Sequence Match ( AT1G02520.1 )
(BLAST)

0001: MNGDGAREGD SVSHEPSTSK SPKEGEETKK EEKSEEKANT VPFYKLFAFA DSSDVLLMIC GSIGAIGNGM SLPFMTLLFG DLIDSFGKNQ NNKDIVDVVS
0101: KVCLKFVYLG LGTLGAAFLQ VACWMITGER QAARIRSTYL KTILRQDIGF FDVETNTGEV VGRMSGDTVL IQDAMGEKVG KFIQLVSTFV GGFVLAFIKG
0201: WLLTLVMLTS IPLLAMAGAA MALIVTRASS RGQAAYAKAA TVVEQTIGSI RTVASFTGEK QAINSYKKFI TSAYKSSIQQ GFSTGLGLGV MFFVFFSSYA
0301: LAIWFGGKMI LEKGYTGGAV INVIIIVVAG SMSLGQTSPC VTAFAAGQAA AYKMFETIKR KPLIDAYDVN GKVLEDIRGD IELKDVHFSY PARPDEEIFD
0401: GFSLFIPSGA TAALVGESGS GKSTVISLIE RFYDPKSGAV LIDGVNLKEF QLKWIRSKIG LVSQEPVLFS SSIMENIAYG KENATVEEIK AATELANAAK
0501: FIDKLPQGLD TMVGEHGTQL SGGQKQRIAI ARAILKDPRI LLLDEATSAL DAESERVVQE ALDRVMVNRT TVIVAHRLST VRNADMIAVI HRGKMVEKGS
0601: HSELLKDSEG AYSQLIRLQE INKDVKTSEL SSGSSFRNSN LKKSMEGTSS VGNSSRHHSL NVLGLTTGLD LGSHSQRAGQ DETGTASQEP LPKVSLTRIA
0701: ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PAHELKRDSR FWAIIFVALG VTSLIVSPTQ MYLFAVAGGK LIRRIRSMCF EKAVHMEVAW
0801: FDEPQNSSGT MGARLSADAT LIRALVGDAL SLAVQNVASA ASGLIIAFTA SWELALIILV MLPLIGINGF VQVKFMKGFS ADAKSKYEEA SQVANDAVGS
0901: IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFFILFCVY ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1001: AAASIFAIID RKSKIDSSDE TGTVLENVKG DIELRHLSFT YPARPDIQIF RDLCLTIRAG KTVALVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1101: LQLKWLRQQM GLVGQEPVLF NDTIRANIAY GKGSEEAATE SEIIAAAELA NAHKFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1201: TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIA EKGTHETLIK IEGGVYASLV QLHMTASN

Arabidopsis Description

ABCB11ABC transporter B family member 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWX7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.