Factsheet for VIT_13s0019g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g010310.2.1	Tomato	plasma membrane	88.0	89.03
HORVU3Hr1G117250.1	Barley	mitochondrion	7.38	86.49
KRG92957	Soybean	nucleus	88.38	82.13
KRH36206	Soybean	cytosol, golgi, plastid	88.31	82.06
KRH70512	Soybean	extracellular	87.85	81.46
KRH01590	Soybean	mitochondrion	87.77	81.38
GSMUA_Achr3P17720_001	Banana	peroxisome	78.15	81.15
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	85.62	79.44
AT3G55320.1	Thale cress	cytosol, peroxisome, plasma membrane	86.0	79.4
CDY65312	Canola	cytosol	85.23	79.2
CDX76106	Canola	cytosol, golgi, peroxisome	85.15	79.07
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	85.0	78.93
CDY24958	Canola	mitochondrion, plasma membrane, plastid	84.69	78.92
AT2G39480.1	Thale cress	cytosol, mitochondrion, plasma membrane	85.31	78.82
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	85.31	78.76
Bra005036.1-P	Field mustard	mitochondrion	85.31	78.76
CDY07647	Canola	cytosol	84.54	78.44
Bra000136.1-P	Field mustard	cytosol, mitochondrion, peroxisome	84.46	78.26
VIT_06s0004g04100.t01	Wine grape	cytosol	83.62	77.37
KXG34231	Sorghum	cytosol, plasma membrane, vacuole	81.85	75.95
TraesCS3A01G536300.1	Wheat	cytosol, plasma membrane, vacuole	81.54	75.66
TraesCS3D01G541700.1	Wheat	cytosol, plasma membrane, vacuole	81.54	75.34
TraesCS3B01G607600.1	Wheat	cytosol, plasma membrane, vacuole	81.31	74.96
Zm00001d028671_P002	Maize	cytosol, plasma membrane, vacuole	80.38	74.7
EER92449	Sorghum	plasma membrane	81.0	74.52
Os03t0280000-01	Rice	plasma membrane	80.85	74.49
Zm00001d041947_P001	Maize	cytosol, peroxisome, plasma membrane	80.23	74.23
Zm00001d047780_P002	Maize	plasma membrane	80.54	74.1
TraesCS4A01G101600.3	Wheat	cytosol, plasma membrane, plastid	80.15	73.95
TraesCS4B01G203000.1	Wheat	cytosol, plasma membrane, plastid	80.15	73.95
TraesCS4D01G203900.2	Wheat	cytosol, plasma membrane, plastid	80.08	73.88
VIT_10s0003g02550.t01	Wine grape	cytosol, nucleus, peroxisome	17.15	40.92
VIT_14s0108g00430.t01	Wine grape	cytosol, peroxisome, plasma membrane	39.15	40.72
VIT_18s0001g14660.t01	Wine grape	peroxisome, plasma membrane, vacuole	37.92	40.41
VIT_02s0012g01660.t01	Wine grape	plasma membrane	38.23	39.98
VIT_14s0066g02320.t01	Wine grape	peroxisome	33.69	37.86
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	37.46	37.55
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	39.0	37.44
VIT_10s0003g02540.t01	Wine grape	plasma membrane	35.15	37.12
VIT_17s0000g09760.t01	Wine grape	plasma membrane	33.69	36.59
VIT_10s0003g02570.t01	Wine grape	plasma membrane	34.77	36.48
VIT_19s0085g00060.t01	Wine grape	endoplasmic reticulum, plasma membrane, plastid	34.23	36.33
VIT_05s0020g00890.t01	Wine grape	cytosol, peroxisome, plasma membrane	36.15	36.32
VIT_10s0003g02580.t01	Wine grape	plasma membrane	34.31	35.26
VIT_01s0137g00350.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	33.77	35.06
VIT_16s0098g00570.t01	Wine grape	cytosol, plasma membrane, vacuole	31.77	34.76
VIT_11s0016g03160.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	32.23	34.2
VIT_09s0002g00750.t01	Wine grape	peroxisome, plastid	33.31	27.46

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:100259831	wikigene:100259831	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	ProteinID:CCB56383	ProteinID:CCB56383.1	ncoils:Coil
UniProt:F6HN95	EMBL:FN595998	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439
InterPro:IPR011527	InterPro:IPR036640	EntrezGene:LOC100259831	wikigene:LOC100259831	InterPro:P-loop_NTPase	PFAM:PF00005
PFAM:PF00664	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24222	PANTHER:PTHR24222:SF21	SMART:SM00382
SUPFAM:SSF52540	SUPFAM:SSF90123	TIGR:TC54361	TMHMM:TMhelix	UniParc:UPI000210853D	ArrayExpress:VIT_13s0019g00310
EnsemblPlantsGene:VIT_13s0019g00310	EnsemblPlants:VIT_13s0019g00310.t01	unigene:Vvi.11021	RefSeq:XP_002284223	RefSeq:XP_002284223.2	SEG:seg

Description

No Description!

Coordinates

chr13:+:2409959..2421996

Molecular Weight (calculated)

144431.0 Da

IEP (calculated)

7.196

GRAVY (calculated)

0.070

Length

1300 amino acids

Sequence
(BLAST)

0001: MGKLMIEMQN LIHILASTMV FIAVGVFVAG WIEVSCWILT GERQTAVIRS RYVQVLLNQD MSFFDTYGNN GDIVSQVLSD VLLIQSALSE KVGNYIHNMA
0101: TFFSGLIIGF INCWEIALIT LATGPFIVAA GGISNIFLHR LAENIQDAYA EAASIAEQAV SYIRTLYAFT NETLAKYSYA TSLQATLRYG ILISLVQGLG
0201: LGFTYGLAIC SCALQLWVGR FLVIHGRAHG GEIITALFSV ILSGLGLNQA ATNFYSFDQG RIAAYRLFEM ISRSTSVVNH DGNTLPSVQG NIEFRNVYFS
0301: YLSRPEIPIL SGFYLSVPAK KAVALVGRNG SGKSSIIPLM ERFYDPTLGE VLLDGENIKN LKLEWLRSQI GLVTQEPALL SLSIRDNIAY GRPSATSDQI
0401: EEAAKIAHAH TFISSLEKGY ETQVGRAGLA LTEEQKIKLS VARAVLSNPS ILLLDEVTGG LDFEAERAVQ EALDLLMLGR STIIIARRLS LIRNADYIAV
0501: MEEGQLVEMG THDELLTLDG LYAELLKCEE AAKLPRRMPV RNYKETATFQ IEKDSSASHC FQEPSSPKMV KSPSLQRVPG IHGFRPSDLA FNSQESPKTR
0601: SPPPEQMMEN GVPLDSTDKE PSIKRQDSFE MRLPELPKID VQVAHQQTSN ASDPESPVSP LLTSDPKNER SHSQTFSRPH SQFDDVPMRT KDAKDVRHRE
0701: SPSFWRLVDL SLAEWLYAVL GSIGAAIFGS FNPLLAYVIA LIVTAYYRGG EGGEHSHDDR RHLRQEVDKW CLIIACMGVV TVVANFLQHF YFGIMGEKMT
0801: ERVRRMMFSA MLRNEVGWFD EEDNSADTLS MRLANDATFV RAAFSNRLSI FIQDSAAVIV AVLIGMLLGW RLALVALATL PILTVSAFAQ KLWLAGFSRG
0901: IQEMHRKASL VLEDAVRNIY TVVAFCAGNK VMELYRRQLR KIFKQSFFHG MAIGFAFGFS QFLLFACNAL LLWYTAVSVK NQYMDMPTAL KEYMVFSFAT
1001: FALVEPFGLA PYILKRRKSL TSVFEIIDRV PNIDPDDNSA MKPPNVFGTI ELKNVDFCYP TRPEVLVLSN FSLKVSGGQT VAVVGVSGSG KSTIISLIER
1101: FYDPVAGQVS LDGRDLKSYN LRWLRNHLGL VQQEPIIFST TIRENIIYAR HNASEAEMKE AARIANAHHF ISSLPHGYDT HVGMRGVDLT PGQKQRIAIA
1201: RVVLKNAPIL LLDEASSSIE SESSRVVQEA LDTLIMGNKT TILIAHRAAM MRHVDNIVVL NGGRIMEEGS HDSLVAKNGL YVRLMQPHFG KGLRQHHRLV

Best Arabidopsis Sequence Match ( AT3G55320.1 )
(BLAST)

0001: MMISRGLFGW SPPHMQPLTP VSEVSEPPES PSPYLDPGAE SGGGTGTAAA LAEADEEMDD QDELEPPPAA VPFSQLFACA DRFDWVLMIV GSVAAAAHGT
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI

Arabidopsis Description

ABCB20ABC transporter B family member 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M3B9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.