Factsheet for AT2G39480.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24958	Canola	mitochondrion, plasma membrane, plastid	94.1	94.91
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	94.74	94.67
CDY07647	Canola	cytosol	94.17	94.58
Bra005036.1-P	Field mustard	mitochondrion	94.6	94.53
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	94.03	94.43
Bra000136.1-P	Field mustard	cytosol, mitochondrion, peroxisome	94.03	94.3
AT3G55320.1	Thale cress	cytosol, peroxisome, plasma membrane	90.76	90.7
VIT_13s0019g00310.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	78.82	85.31
KRH36206	Soybean	cytosol, golgi, plastid	84.79	85.28
KRG92957	Soybean	nucleus	84.72	85.2
Solyc04g010310.2.1	Tomato	plasma membrane	77.47	84.82
KRH01590	Soybean	mitochondrion	84.29	84.59
KRH70512	Soybean	extracellular	84.22	84.52
GSMUA_Achr3P17720_001	Banana	peroxisome	74.2	83.39
HORVU3Hr1G117250.1	Barley	mitochondrion	6.54	82.88
KXG34231	Sorghum	cytosol, plasma membrane, vacuole	77.68	78.02
TraesCS3A01G536300.1	Wheat	cytosol, plasma membrane, vacuole	77.4	77.73
TraesCS3D01G541700.1	Wheat	cytosol, plasma membrane, vacuole	77.47	77.47
Zm00001d028671_P002	Maize	cytosol, plasma membrane, vacuole	76.76	77.2
Os03t0280000-01	Rice	plasma membrane	77.4	77.18
TraesCS3B01G607600.1	Wheat	cytosol, plasma membrane, vacuole	77.26	77.09
Zm00001d041947_P001	Maize	cytosol, peroxisome, plasma membrane	76.69	76.8
TraesCS4A01G101600.3	Wheat	cytosol, plasma membrane, plastid	76.9	76.79
EER92449	Sorghum	plasma membrane	77.11	76.79
TraesCS4B01G203000.1	Wheat	cytosol, plasma membrane, plastid	76.83	76.72
TraesCS4D01G203900.2	Wheat	cytosol, plasma membrane, plastid	76.69	76.58
Zm00001d047780_P002	Maize	plasma membrane	76.9	76.57
AT1G10680.1	Thale cress	plasma membrane	36.11	41.4
AT3G28860.1	Thale cress	plasma membrane	36.6	41.13
AT2G36910.1	Thale cress	peroxisome	37.46	40.98
AT1G27940.1	Thale cress	peroxisome, plasma membrane, vacuole	36.25	40.96
AT4G25960.1	Thale cress	plasma membrane	36.53	40.38
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	34.61	37.87
AT3G28345.1	Thale cress	plasma membrane	33.26	37.74
AT3G28390.1	Thale cress	plasma membrane	32.62	37.47
AT4G18050.2	Thale cress	plasma membrane	33.05	37.32
AT3G62150.2	Thale cress	cytosol, nucleus, plasma membrane	34.33	37.27
AT1G02520.1	Thale cress	cytosol, peroxisome, plasma membrane	33.83	37.25
AT4G01830.1	Thale cress	golgi, plasma membrane, vacuole	32.55	37.24
AT3G28360.1	Thale cress	plasma membrane	32.27	36.97
AT4G01820.1	Thale cress	peroxisome, plasma membrane, vacuole	32.27	36.94
AT5G46540.1	Thale cress	golgi	32.13	36.22

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	EntrezGene:818533	InterPro:AAA+_ATPase	ProteinID:AAC27839.1
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	ProteinID:AEC09685.1	ArrayExpress:AT2G39480	EnsemblPlantsGene:AT2G39480
RefSeq:AT2G39480	TAIR:AT2G39480	RefSeq:AT2G39480-TAIR-G	EnsemblPlants:AT2G39480.1	TAIR:AT2G39480.1	EMBL:AY094398
Unigene:At.63501	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0009506	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527
InterPro:IPR036640	RefSeq:NP_181480.1	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	Symbol:PGP6
PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001017
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0005052
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24222	PANTHER:PTHR24222:SF21	UniProt:Q8LPT1	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI00000A01DE	SEG:seg	:	:	:

Description

ABCB6ABC transporter B family member 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPT1]

Coordinates

chr2:-:16477792..16485039

Molecular Weight (calculated)

155885.0 Da

IEP (calculated)

5.992

GRAVY (calculated)

0.071

Length

1407 amino acids

Sequence
(BLAST)

0001: MMISRGLFGW SPPHIQPLTP VSEVSEPPES PSPYLDPGAE HGGTGTAAQA DDEEEMEEPE EMEPPPAAVP FSQLFACADR FDWVLMVFGS VAAAAHGTAL
0101: IVYLHYFAKI VQVLAFPTDS DHLISDDQFN RLLELSLTIV YIAGGVFISG WIEVSCWILT GERQTAVIRS KYVQVLLNQD MSFFDTYGNN GDIVSQVLSD
0201: VLLIQSALSE KVGNYIHNMA TFISGLIIGF VNCWEIALIT LATGPFIVAA GGISNIFLHR LAENIQDAYA EAASIAEQAV SYVRTLYAFT NETLAKYSYA
0301: TSLQATLRYG ILISLVQGLG LGFTYGLAIC SCAMQLWIGR FFVIHHRANG GEIITALFAV ILSGLGLNQA ATNFYSFDQG RIAAYRLFEM ISRSSSGTNQ
0401: EGIILSAVQG NIEFRNVYFS YLSRPEIPIL SGFYLTVPAK KAVALVGRNG SGKSSIIPLM ERFYDPTLGE VLLDGENIKN LKLEWLRSQI GLVTQEPALL
0501: SLSIRENIAY GRDATLDQIE EAAKKAHAHT FISSLEKGYE TQVGKTGLTL TEEQKIKLSI ARAVLLDPTI LLLDEVTGGL DFEAERVVQE ALDLLMLGRS
0601: TIIIARRLSL IRNADYIAVM EEGQLLEMGT HDELINLGNL YAELLKCEEA TKLPRRMPVR NYNDSAAFQA ERDSSAGRGF QEPSSPKMAK SPSLQRGHNV
0701: FRSQELCFNS EESPNDHSPA PEKLGENGSS LDVGEKEPTI KRQDSFEMRL PELPKIDIQC PQRQKSNGSD PESPISPLLI SDPQNERSHS QTFSRPLGHS
0801: DDTSASVKVA KDGQHKEPPS FWRLAQLSFP EWLYAVLGSI GAAIFGSFNP LLAYVIALVV TTYYTSKGSH LREEVDKWCL IIACMGIVTV VANFLQHFYF
0901: GIMGEKMTER VRRMMFSAML RNEVGWYDEE ENSPDTLSMR LANDATFVRA AFSNRLSIFI QDSFAVIVAI LIGLLLGWRL ALVALATLPV LTLSAIAQKL
1001: WLAGFSKGIQ EMHRKASLVL EDAVRNIYTV VAFCAGNKVM ELYRLQLQRI LRQSFFHGMA IGFAFGFSQF LLFACNALLL WYTALSVDRR YMKLSTALTE
1101: YMVFSFATFA LVEPFGLAPY ILKRRRSLAS VFEIIDRVPT IEPDDTSALS PPNVYGSIEL KNIDFCYPTR PEVLVLSNFS LKVNGGQTVA VVGVSGSGKS
1201: TIISLIERYY DPVAGQVLLD GRDLKSYNLR WLRSHMGLIQ QEPIIFSTTI RENIIYARHN ASEAEMKEAA RIANAHHFIS SLPHGYDTHI GMRGVELTQG
1301: QKQRIAIARV VLKNAPILLI DEASSSIESE SSRVVQEALD TLIMGNKTTI LIAHRVAMMR HVDNIVVLNG GKIVEEGTHD CLAGKNGLYV RLMQPHFGKN
1401: LRRHQLI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.