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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, plastid

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plasma membrane, plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:mitochondrion
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY07647 Canola cytosol 99.21 98.79
CDY20443 Canola cytosol, mitochondrion, plasma membrane 95.56 95.15
CDY53591 Canola cytosol, mitochondrion, plasma membrane 95.99 95.1
AT2G39480.1 Thale cress cytosol, mitochondrion, plasma membrane 94.91 94.1
CDX76106 Canola cytosol, golgi, peroxisome 89.53 89.21
CDY65312 Canola cytosol 89.39 89.14
HORVU3Hr1G117250.1 Barley mitochondrion 6.88 86.49
VIT_13s0019g00310.t01 Wine grape endoplasmic reticulum, golgi, plasma membrane 78.92 84.69
KRH01590 Soybean mitochondrion 85.09 84.66
KRH70512 Soybean extracellular 85.09 84.66
Solyc04g010310.2.1 Tomato plasma membrane 77.63 84.28
KRG92957 Soybean nucleus 84.52 84.27
KRH36206 Soybean cytosol, golgi, plastid 84.44 84.2
GSMUA_Achr3P17720_001 Banana peroxisome 74.91 83.47
TraesCS3A01G536300.1 Wheat cytosol, plasma membrane, vacuole 78.64 78.3
KXG34231 Sorghum cytosol, plasma membrane, vacuole 78.49 78.16
TraesCS3D01G541700.1 Wheat cytosol, plasma membrane, vacuole 78.64 77.97
TraesCS3B01G607600.1 Wheat cytosol, plasma membrane, vacuole 78.35 77.52
Os03t0280000-01 Rice plasma membrane 78.14 77.25
Zm00001d028671_P002 Maize cytosol, plasma membrane, vacuole 77.35 77.13
Zm00001d041947_P001 Maize cytosol, peroxisome, plasma membrane 77.56 77.01
Zm00001d047780_P002 Maize plasma membrane 77.71 76.72
EER92449 Sorghum plasma membrane 77.71 76.72
TraesCS4A01G101600.3 Wheat cytosol, plasma membrane, plastid 77.35 76.58
TraesCS4B01G203000.1 Wheat cytosol, plasma membrane, plastid 77.28 76.51
TraesCS4D01G203900.2 Wheat cytosol, plasma membrane, plastid 77.13 76.37
CDX84897 Canola cytosol 4.09 48.31
CDX86437 Canola cytosol 4.87 45.64
CDX93393 Canola plasma membrane 36.56 41.63
CDY00109 Canola plasma membrane 37.13 41.61
CDX86408 Canola plasma membrane 36.7 41.39
CDY37953 Canola plasma membrane 36.34 41.39
CDY20012 Canola plasma membrane 37.06 41.26
CDY27639 Canola plasma membrane 35.99 41.22
CDX92739 Canola plasma membrane 36.63 41.18
CDX94395 Canola plasma membrane 36.34 41.09
CDY65012 Canola plasma membrane 36.7 40.86
CDY42770 Canola golgi, plasma membrane, vacuole 33.05 40.62
CDX89380 Canola plasma membrane 36.34 39.76
CDY46744 Canola cytosol, peroxisome, plasma membrane 37.78 39.39
CDX79704 Canola plasma membrane 37.85 39.37
CDY25095 Canola cytosol 33.76 39.05
CDX67881 Canola cytosol 33.62 39.05
CDY27510 Canola cytosol 33.48 38.95
CDX80072 Canola cytosol 33.33 38.81
CDY48003 Canola cytosol 32.97 38.59
CDY51307 Canola cytosol, peroxisome, plasma membrane 34.77 38.37
CDY35168 Canola golgi, peroxisome, plasma membrane 29.96 38.31
CDY37776 Canola cytosol, peroxisome, plasma membrane 34.12 38.29
CDX84896 Canola plasma membrane 28.82 38.25
CDY15432 Canola cytosol 33.55 38.24
CDY24379 Canola plasma membrane 31.83 37.98
CDY58790 Canola peroxisome 33.48 37.94
CDX89963 Canola cytosol, nucleus, plasma membrane 34.34 37.9
CDX86445 Canola plasma membrane 33.69 37.78
CDY15249 Canola cytosol, peroxisome, plasma membrane 34.34 37.72
CDY20842 Canola endoplasmic reticulum, golgi, plasma membrane 31.68 37.71
CDY51560 Canola peroxisome 33.62 37.49
CDY04018 Canola plasma membrane 33.19 37.31
CDX86442 Canola cytosol, mitochondrion, plastid 1.79 36.76
CDX85192 Canola plasma membrane 33.33 36.64
CDY64952 Canola peroxisome, plasma membrane, vacuole 23.15 32.79
CDY21871 Canola endoplasmic reticulum, plasma membrane 1.58 30.56
Protein Annotations
Gene3D:1.20.1560.10MapMan:24.1.3.1.1Gene3D:3.40.50.300GO:A0A078GK24UniProt:A0A078GK24InterPro:AAA+_ATPase
InterPro:ABC1_TM_domInterPro:ABC1_TM_sfInterPro:ABC_transporter-likeEnsemblPlants:CDY24958ProteinID:CDY24958ProteinID:CDY24958.1
ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0016787GO:GO:0016887GO:GO:0042626GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00028755001InterPro:IPR003439
InterPro:IPR011527InterPro:IPR036640InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF00664PFscan:PS50893
PFscan:PS50929PANTHER:PTHR24222PANTHER:PTHR24222:SF21SMART:SM00382SUPFAM:SSF52540SUPFAM:SSF90123
TMHMM:TMhelixUniParc:UPI0004EEDE6BSEG:seg:::
Description
BnaC03g22140DBnaC03g22140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK24]
Coordinates
chrLK032166:+:503520..510369
Molecular Weight (calculated)
154290.0 Da
IEP (calculated)
6.175
GRAVY (calculated)
0.079
Length
1395 amino acids
Sequence
(BLAST)
0001: MVSRGLFGWS PPHIQPLTPV SEVSEPPESP SPYLDPSAEN GGAGMATQAE EEEEMDEPEE MEPPPAAVPF SQLFACADRF DWVLMVLGSV AAAAHGAALI
0101: VYLHYFAKIV QVLAYGTRGA EDQFDRLVEL SLTIVYIAGG VFISGWIEVS CWILTGERQT AVIRSKYVQV LLNQDMSFFD TYGNNGDIVS QVLSDVLLIQ
0201: SALSEKVGNY IHNMATFISG LVIGFVNCWE IALITLATGP FIVAAGGVSN IFLHRLAENI QDAYAEAASI AEQAVSYIRT LYAFTNETLA KYSYATSLQA
0301: TLRYGILISL VQGLGLGFTY GLAICSCALQ LWVGRFFVIH GRANGGEIIT ALFAVILSGL GLNQAATNFY SFDQGRIAAY RLFEMISRSS SGTNQEGTIL
0401: SAVEGNIEFR NVYFSYLSRP EIPILSGFYL TVPAKKAVAL VGRNGSGKSS IIPLMERFYD PTLGEVLLDG ENVKNLKLEW LRSQIGLVTQ EPALLSLSIR
0501: ENIAYGRDAT LDQIEEAAKK ARAHTFISSL EKGYETQVGK AGLTLTEEQK IKLSIARAVL LDPKILLLDE VTGGLDFEAE RVVQEALDLL MLGRSTIIIA
0601: RRLSLIRNAD YIAVMEEGQL LEMGTHDELI NLGNLYAELL KCEEATKLPR RMPVRNYNDP AVFQAERDSS AGRGFQEHSS PKMAKSPSLQ RGHNVFRPQE
0701: MCFNSEESPN DHNPAPEKMG ENGSSLDVAE KEPTIKRQDS FEMRLPELPK IDIQCPQRQK SNGSDPESPI SPLLISDPQN ERSHSQTFSR PLSHSDDTST
0801: NVVVKSPSFW KLAQLSFPEW LYAVLGSIGA AIFGSFNPLL AYVIALVVTA YYNRKGSHLR EEVDKWCLII AGMGLVTVVA NFLQHFYFGI MGEKMTERVR
0901: RMMFSAMLRN EVGWYDEEEN SPDTLSMRLA NDATFVRAAF SNRLSILIQD SFAVIVAILI GLLLGWRLAL VALATLPILT LSAIAQKLWL AGFSKGIQEM
1001: HRKASLVLED AVRNIYTVVA FCAGNKVMEL YRLQLQRILR QSFLHGMAIG LAFGFSQFLL FACNALLLWF TAFSVKRGYM KLSTALTEYM VFSFATFALV
1101: EPFGLAPYIL KRRRSLASVF EIIDRVPTIE PDDTSALSPP NVYGSIELKN IDFCYPTRPE VLVLSNFSLK VSGGQTLAVV GVSGSGKSTI ISLIERYYDP
1201: VAGQVLLDGR DLKSYNLRWL RSHMGLIQQE PIIFSTTIRE NIIYARHNAS EAEMKEAARI ANAHHFISSL AHGYDTHIGM RGVELTQGQK QRIAIARVVL
1301: KNAPILLIDE ASSSIESESS RVVQEALDTL IMGNKTTILI AHRAAMMRHV DNIVVLNGGK IVEQGTHDTL SSKNGLYVRL MQPHYGKGLR QHRLI
Best Arabidopsis Sequence Match ( AT2G39480.1 )
(BLAST)
0001: MMISRGLFGW SPPHIQPLTP VSEVSEPPES PSPYLDPGAE HGGTGTAAQA DDEEEMEEPE EMEPPPAAVP FSQLFACADR FDWVLMVFGS VAAAAHGTAL
0101: IVYLHYFAKI VQVLAFPTDS DHLISDDQFN RLLELSLTIV YIAGGVFISG WIEVSCWILT GERQTAVIRS KYVQVLLNQD MSFFDTYGNN GDIVSQVLSD
0201: VLLIQSALSE KVGNYIHNMA TFISGLIIGF VNCWEIALIT LATGPFIVAA GGISNIFLHR LAENIQDAYA EAASIAEQAV SYVRTLYAFT NETLAKYSYA
0301: TSLQATLRYG ILISLVQGLG LGFTYGLAIC SCAMQLWIGR FFVIHHRANG GEIITALFAV ILSGLGLNQA ATNFYSFDQG RIAAYRLFEM ISRSSSGTNQ
0401: EGIILSAVQG NIEFRNVYFS YLSRPEIPIL SGFYLTVPAK KAVALVGRNG SGKSSIIPLM ERFYDPTLGE VLLDGENIKN LKLEWLRSQI GLVTQEPALL
0501: SLSIRENIAY GRDATLDQIE EAAKKAHAHT FISSLEKGYE TQVGKTGLTL TEEQKIKLSI ARAVLLDPTI LLLDEVTGGL DFEAERVVQE ALDLLMLGRS
0601: TIIIARRLSL IRNADYIAVM EEGQLLEMGT HDELINLGNL YAELLKCEEA TKLPRRMPVR NYNDSAAFQA ERDSSAGRGF QEPSSPKMAK SPSLQRGHNV
0701: FRSQELCFNS EESPNDHSPA PEKLGENGSS LDVGEKEPTI KRQDSFEMRL PELPKIDIQC PQRQKSNGSD PESPISPLLI SDPQNERSHS QTFSRPLGHS
0801: DDTSASVKVA KDGQHKEPPS FWRLAQLSFP EWLYAVLGSI GAAIFGSFNP LLAYVIALVV TTYYTSKGSH LREEVDKWCL IIACMGIVTV VANFLQHFYF
0901: GIMGEKMTER VRRMMFSAML RNEVGWYDEE ENSPDTLSMR LANDATFVRA AFSNRLSIFI QDSFAVIVAI LIGLLLGWRL ALVALATLPV LTLSAIAQKL
1001: WLAGFSKGIQ EMHRKASLVL EDAVRNIYTV VAFCAGNKVM ELYRLQLQRI LRQSFFHGMA IGFAFGFSQF LLFACNALLL WYTALSVDRR YMKLSTALTE
1101: YMVFSFATFA LVEPFGLAPY ILKRRRSLAS VFEIIDRVPT IEPDDTSALS PPNVYGSIEL KNIDFCYPTR PEVLVLSNFS LKVNGGQTVA VVGVSGSGKS
1201: TIISLIERYY DPVAGQVLLD GRDLKSYNLR WLRSHMGLIQ QEPIIFSTTI RENIIYARHN ASEAEMKEAA RIANAHHFIS SLPHGYDTHI GMRGVELTQG
1301: QKQRIAIARV VLKNAPILLI DEASSSIESE SSRVVQEALD TLIMGNKTTI LIAHRVAMMR HVDNIVVLNG GKIVEEGTHD CLAGKNGLYV RLMQPHFGKN
1401: LRRHQLI
Arabidopsis Description
ABCB6ABC transporter B family member 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPT1]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.