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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY27510 Canola cytosol 95.81 95.25
Bra040475.1-P Field mustard cytosol 99.75 92.39
CDX80072 Canola cytosol 91.86 91.4
CDY37776 Canola cytosol, peroxisome, plasma membrane 91.69 87.93
AT2G47000.1 Thale cress cytosol, peroxisome, plasma membrane 94.21 87.33
CDX67881 Canola cytosol 82.89 82.26
CDY25095 Canola cytosol 82.72 81.76
Os05t0137200-01 Rice plasma membrane 24.5 74.3
GSMUA_Achr8P29860_001 Banana endoplasmic reticulum 67.03 72.24
VIT_07s0005g02660.t01 Wine grape cytosol, peroxisome, plasma membrane 76.09 69.93
CDX89963 Canola cytosol, nucleus, plasma membrane 73.83 69.62
CDY15249 Canola cytosol, peroxisome, plasma membrane 73.91 69.37
KRH33644 Soybean cytosol, peroxisome, plasma membrane 74.41 69.19
CDY51307 Canola cytosol, peroxisome, plasma membrane 73.32 69.15
KRH69152 Soybean cytosol, peroxisome, plasma membrane 73.99 68.8
PGSC0003DMT400018820 Potato cytosol, peroxisome, plasma membrane 74.25 68.76
CDY15432 Canola cytosol 70.55 68.71
KRH68334 Soybean cytosol, peroxisome, plasma membrane 72.4 67.26
Solyc06g009280.1.1 Tomato cytosol, peroxisome, plasma membrane 72.06 66.64
PGSC0003DMT400018812 Potato cytosol, peroxisome, plasma membrane 67.2 66.09
CDY24379 Canola plasma membrane 64.35 65.61
GSMUA_Achr1P25070_001 Banana plasma membrane 49.83 65.56
CDY20842 Canola endoplasmic reticulum, golgi, plasma membrane 63.93 65.02
CDY58790 Canola peroxisome 67.11 64.99
OQU77362 Sorghum mitochondrion, plasma membrane 62.42 64.47
KXG32330 Sorghum plastid 68.54 63.83
CDY51560 Canola peroxisome 66.61 63.47
Zm00001d008178_P001 Maize cytosol, peroxisome, plasma membrane, plastid 68.04 63.46
Solyc06g009290.2.1 Tomato nucleus 73.74 62.79
TraesCS1B01G099000.1 Wheat cytosol, peroxisome, plasma membrane 66.19 61.88
TraesCS1A01G081300.1 Wheat unclear 66.11 61.76
TraesCS1D01G082900.2 Wheat cytosol, peroxisome, plasma membrane 65.94 61.6
HORVU1Hr1G017460.3 Barley plasma membrane 65.86 61.18
CDY35168 Canola golgi, peroxisome, plasma membrane 55.87 61.04
CDX84897 Canola cytosol 6.04 61.02
Zm00001d040562_P002 Maize cytosol, peroxisome, plasma membrane 67.95 60.67
CDX86437 Canola cytosol 7.47 59.73
GSMUA_Achr9P16700_001 Banana plasma membrane 62.84 58.98
CDX86442 Canola cytosol, mitochondrion, plastid 3.19 55.88
CDX86408 Canola plasma membrane 46.73 45.03
CDY65012 Canola plasma membrane 47.23 44.93
CDY00109 Canola plasma membrane 46.64 44.66
CDY20012 Canola plasma membrane 46.73 44.45
CDX93393 Canola plasma membrane 43.96 42.78
CDY37953 Canola plasma membrane 43.79 42.61
CDX94395 Canola plasma membrane 43.96 42.46
CDX92739 Canola plasma membrane 43.96 42.22
CDY27639 Canola plasma membrane 42.11 41.22
CDX89380 Canola plasma membrane 43.88 41.02
CDX86445 Canola plasma membrane 41.69 39.95
CDY42770 Canola golgi, plasma membrane, vacuole 37.75 39.65
CDX85192 Canola plasma membrane 42.03 39.48
CDY04018 Canola plasma membrane 40.94 39.32
CDY46744 Canola cytosol, peroxisome, plasma membrane 43.37 38.64
CDX79704 Canola plasma membrane 43.46 38.63
CDX84896 Canola plasma membrane 33.22 37.68
CDY64952 Canola peroxisome, plasma membrane, vacuole 27.77 33.6
CDY07647 Canola cytosol 38.84 33.05
CDY20443 Canola cytosol, mitochondrion, plasma membrane 38.84 33.05
CDY24958 Canola mitochondrion, plasma membrane, plastid 38.59 32.97
CDX76106 Canola cytosol, golgi, peroxisome 38.59 32.86
CDY53591 Canola cytosol, mitochondrion, plasma membrane 38.76 32.81
CDY65312 Canola cytosol 38.51 32.81
CDY21871 Canola endoplasmic reticulum, plasma membrane 1.59 26.39
Protein Annotations
Gene3D:1.20.1560.10MapMan:24.1.3.1.1Gene3D:3.40.50.300GO:A0A078IFQ8UniProt:A0A078IFQ8InterPro:AAA+_ATPase
InterPro:ABC1_TM_domInterPro:ABC1_TM_sfInterPro:ABC_transporter-likeInterPro:ABC_transporter_CSEnsemblPlants:CDY48003ProteinID:CDY48003
ProteinID:CDY48003.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0016787GO:GO:0016887GO:GO:0042626GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00088647001InterPro:IPR003439
InterPro:IPR011527InterPro:IPR036640InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF00664ScanProsite:PS00211
PFscan:PS50893PFscan:PS50929PANTHER:PTHR24221PANTHER:PTHR24221:SF292SMART:SM00382SUPFAM:SSF52540
SUPFAM:SSF90123TMHMM:TMhelixUniParc:UPI0004EEE1A0SEG:seg::
Description
BnaA04g26870DBnaA04g26870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFQ8]
Coordinates
chrLK032749:+:12764..17668
Molecular Weight (calculated)
128667.0 Da
IEP (calculated)
6.322
GRAVY (calculated)
0.088
Length
1192 amino acids
Sequence
(BLAST)
0001: MASESGLNGD GNIVEDVSET KRSREEDKEV KKTEKKEEHE KTKTVPFYKL FAFADSFDIL LMILGTLGSI GNGLGFPIMT VLFGDLIDAF GQNQNDSNVS
0101: DKVSKVALKF VWLGIGTFAA AFLQLSGWMI SGERQAARIR SMYLKTILRQ DIAFFDVDTN TGEVVGRMSG DTVLIQDAMG EKVGKAIQLL STFVGGFVIA
0201: FLKGWLLTLV MLSSIPLLVM AGAGLAIVIA KTASRGQTAY ANAAVVVEQT IGSIRTVASF TGEKQAINNY NKHLLTAYKA GVIEGGSTGL GLGTLFLVIF
0301: CSYALAVWYG GKLILDKGYT GGQVLNIIIS VLTGSMSLGQ ASPCLSAFAA GQAAAYKMFE TIERRPDIDS YSTNGKVLDD IKGDIELKDV YFTYPARPDE
0401: QIFRGFSLFI SSGTTVALVG QSGSGKSTVV SLIERFYDPQ AGEIIIDGVN LKEFQLKWIR SKIGLVSQEP VLFTSSIKDN IAYGKEDATI EEIKAAAELA
0501: NASKFVDKLP QGLDTMVGEH GTQLSGGQKQ RIAVARAILK DPRILLLDEA TSALDAESER VVQEALDRIM VNRTTVVVAH RLSTVRNADM IAVIHQGKIV
0601: EKGSHTELLK DPEGAYSQLI RLQEEKKGEE NPTDEQKIKS SLGRSLSKGG SSRGNSSRHS FNMFGFPSGV EGNDVTQDQE EAYPAQTFFF AIAGCKLVKR
0701: IRSMCFEKVV HMEVGWFDES EHSSGTIGAR LSADAAAIRG LVGDALAQMV QNLSSILAGL IIAFLACWQL AFVVLAMLPL IALNGFLYMK FMQGFSADAK
0801: KMYGEASQVA NDAVGSIRTV ASFCAEEKVM NMYTKKCEGP MKTGIRQGIV SGIGFGFSFF VLFASYACSF YVGARLVDDG KTTFDSVFRV FFALTMAAMA
0901: ISQSSSLSPD SSKADIAAAS IFAIIDRESK IDPSVESGRV LDTVKGDIEL RHVSFKYPAR PNVQIFQDLC LSIRAGKTVA LVGESGSGKS TVIALLQRFY
1001: DPDSGEITLD GVEIKSLRLK WLRQQTGLVS QEPILFNETI RANIAYGKGG DASESEIVSA AELSNAHGFI SGLQQGYDTM VGERGIQLSG GQKQRVAIAR
1101: AIVKDPKVLL LDEATSALDA ESERVVQDAL DRVMVNRTTI VVAHRLSTIK NADVIAVVKN GVIVEKGKHE SLINIKDGVY ASLVQLHLSA AS
Best Arabidopsis Sequence Match ( AT2G47000.1 )
(BLAST)
0001: MASESGLNGD PNILEEVSET KRDKEEEEEV KKTEKKDEEH EKTKTVPFYK LFAFADSFDF LLMILGTLGS IGNGLGFPLM TLLFGDLIDA FGENQTNTTD
0101: KVSKVALKFV WLGIGTFAAA FLQLSGWMIS GERQAARIRS LYLKTILRQD IAFFDIDTNT GEVVGRMSGD TVLIQDAMGE KVGKAIQLLA TFVGGFVIAF
0201: VRGWLLTLVM LSSIPLLVMA GALLAIVIAK TASRGQTAYA KAATVVEQTI GSIRTVASFT GEKQAISNYN KHLVTAYKAG VIEGGSTGLG LGTLFLVVFC
0301: SYALAVWYGG KLILDKGYTG GQVLNIIIAV LTGSMSLGQT SPCLSAFAAG QAAAYKMFET IERRPNIDSY STNGKVLDDI KGDIELKDVY FTYPARPDEQ
0401: IFRGFSLFIS SGTTVALVGQ SGSGKSTVVS LIERFYDPQA GDVLIDGINL KEFQLKWIRS KIGLVSQEPV LFTASIKDNI AYGKEDATTE EIKAAAELAN
0501: ASKFVDKLPQ GLDTMVGEHG TQLSGGQKQR IAVARAILKD PRILLLDEAT SALDAESERV VQEALDRIMV NRTTVVVAHR LSTVRNADMI AVIHQGKIVE
0601: KGSHTELLKD PEGAYSQLIR LQEEKKSDEN AAEEQKMSSI ESFKQSSLRK SSLGRSLSKG GSSRGNSSRH SFNMFGFPAG IDGNVVQDQE EDDTTQPKTE
0701: PKKVSIFRIA ALNKPEIPVL ILGSISAAAN GVILPIFGIL ISSVIKAFFQ PPKKLKEDTS FWAIIFMVLG FASIIAYPAQ TFFFAIAGCK LVQRIRSMCF
0801: EKVVHMEVGW FDEPENSSGT IGARLSADAA TIRGLVGDSL AQTVQNLSSI LAGLIIAFLA CWQLAFVVLA MLPLIALNGF LYMKFMKGFS ADAKKMYGEA
0901: SQVANDAVGS IRTVASFCAE DKVMNMYSKK CEGPMKNGIR QGIVSGIGFG FSFFVLFSSY AASFYVGARL VDDGKTTFDS VFRVFFALTM AAMAISQSSS
1001: LSPDSSKADV AAASIFAIMD RESKIDPSVE SGRVLDNVKG DIELRHVSFK YPARPDVQIF QDLCLSIRAG KTVALVGESG SGKSTVIALL QRFYDPDSGE
1101: ITLDGVEIKS LRLKWLRQQT GLVSQEPILF NETIRANIAY GKGGDASESE IVSSAELSNA HGFISGLQQG YDTMVGERGI QLSGGQKQRV AIARAIVKDP
1201: KVLLLDEATS ALDAESERVV QDALDRVMVN RTTIVVAHRL STIKNADVIA VVKNGVIVEK GKHDTLINIK DGVYASLVQL HLTAAS
Arabidopsis Description
ABCB4ABC transporter B family member 4 [Source:UniProtKB/Swiss-Prot;Acc:O80725]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.