CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86437	Canola	cytosol	89.71	40.94
CDX84897	Canola	cytosol	50.0	28.81
CDX86445	Canola	plasma membrane	83.82	4.58
CDX85192	Canola	plasma membrane	83.82	4.49
CDY04018	Canola	plasma membrane	80.88	4.43
CDY48003	Canola	cytosol	55.88	3.19
CDX80072	Canola	cytosol	55.88	3.17
CDY27510	Canola	cytosol	55.88	3.17
CDX67881	Canola	cytosol	55.88	3.16
CDY25095	Canola	cytosol	55.88	3.15
CDY35168	Canola	golgi, peroxisome, plasma membrane	50.0	3.12
CDY42770	Canola	golgi, plasma membrane, vacuole	51.47	3.08
CDX94395	Canola	plasma membrane	55.88	3.08
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	52.94	3.07
CDY37776	Canola	cytosol, peroxisome, plasma membrane	55.88	3.06
CDY15432	Canola	cytosol	54.41	3.02
CDY24379	Canola	plasma membrane	51.47	2.99
CDX89380	Canola	plasma membrane	55.88	2.98
CDY51307	Canola	cytosol, peroxisome, plasma membrane	54.41	2.93
CDX89963	Canola	cytosol, nucleus, plasma membrane	54.41	2.93
CDY51560	Canola	peroxisome	52.94	2.88
CDY58790	Canola	peroxisome	51.47	2.84
CDY15249	Canola	cytosol, peroxisome, plasma membrane	52.94	2.83
CDX92739	Canola	plasma membrane	51.47	2.82
CDY65012	Canola	plasma membrane	51.47	2.79
CDY27639	Canola	plasma membrane	50.0	2.79
CDX86408	Canola	plasma membrane	50.0	2.75
CDY00109	Canola	plasma membrane	50.0	2.73
CDY20012	Canola	plasma membrane	50.0	2.71
CDY46744	Canola	cytosol, peroxisome, plasma membrane	51.47	2.62
CDX93393	Canola	plasma membrane	47.06	2.61
CDY37953	Canola	plasma membrane	47.06	2.61
CDX79704	Canola	plasma membrane	51.47	2.61
CDY24958	Canola	mitochondrion, plasma membrane, plastid	36.76	1.79
CDY65312	Canola	cytosol	36.76	1.79
CDX76106	Canola	cytosol, golgi, peroxisome	36.76	1.79
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	36.76	1.78
CDY07647	Canola	cytosol	36.76	1.78
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	36.76	1.78
CDY21871	Canola	endoplasmic reticulum, plasma membrane	0.0	0.0
CDY64952	Canola	peroxisome, plasma membrane, vacuole	0.0	0.0
CDX84896	Canola	plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDX86442	EnsemblPlantsGene:GSBRNA2T00144588001	Gene3D:3.40.50.300	InterPro:P-loop_NTPase	PANTHER:PTHR24221	PANTHER:PTHR24221:SF381
ProteinID:CDX86442	ProteinID:CDX86442.1	SUPFAM:SSF52540	UniParc:UPI0004EE56EB	MapMan:35.1	:

Description

BnaA06g31590D

Coordinates

chrLK031845:+:1570760..1570966

Molecular Weight (calculated)

7318.9 Da

IEP (calculated)

7.346

GRAVY (calculated)

0.228

Length

68 amino acids

Sequence
(BLAST)

1: MVQDALERVM VGRTSVVISH RLSTIQNCDT IAVLDNGKVV ECGDHSSLLA KGPTGAYFSL VSLQRNLC

Best Arabidopsis Sequence Match ( AT3G28390.1 )
(BLAST)

0001: MMKSFGSIRS IFMHADGVDW MLMALGLIGA VGDGFITPII FFICSKLLNN VGGSSFDDET FMQTVAKNAV ALVYVACASW VICFIEGYCW TRTGERQAAK
0101: MREKYLKAVL RQDVGYFDLH VTSTSDVITS VSSDSLVIQD FLSEKLPNFL MNTSAFVASY IVGFLLLWRL TIVGFPFIIL LLIPGLMYGR ALIRISMKIR
0201: EEYNEAGSIA EQVISSVRTV YAFGSEKKMI EKFSTALQGS VKLGLRQGLA KGIAIGSNGI TYAIWGFLTW YGSRMVMNHG SKGGTVSSVI VCVTFGGTSL
0301: GQSLSNLKYF SEAFVVGERI MKVINRVPGI DSDNLEGQIL EKTRGEVEFN HVKFTYPSRP ETPIFDDLCL RVPSGKTVAL VGGSGSGKST VISLLQRFYD
0401: PIAGEILIDG LPINKLQVKW LRSQMGLVSQ EPVLFATSIK ENILFGKEDA SMDEVVEAAK ASNAHSFISQ FPNSYQTQVG ERGVQLSGGQ KQRIAIARAI
0501: IKSPIILLLD EATSALDSES ERVVQEALDN ASIGRTTIVI AHRLSTIRNA DVICVVHNGR IIETGSHEEL LEKLDGQYTS LVRLQQVDNK ESDHISVEEG
0601: QASSLSKDLK YSPKEFIHST SSNIVRDFPN LSPKDGKSLV PSFKRLMSMN RPEWKHALYG CLGAALFGAV QPIYSYSSGS MVSVYFLASH DQIKEKTRIY
0701: VLLFVGLALF TFLSNISQHY GFAYMGEYLT KRIRERMLGK ILTFEVNWFD KDENSSGAIC SRLAKDANMV RSLVGDRMSL LVQTISAVSI TCAIGLVISW
0801: RFSIVMMSVQ PVIVVCFYTQ RVLLKSMSRN AIKGQDESSK LAAEAVSNIR TITAFSSQER IINLLKMVQE GPRKDSARQS WLAGIMLGTS QSLITCVSAL
0901: NFWYGGKLIA DGKMMSKEFL EIFLIFASTG RVIAEAGTMT KDLVKGSDAV ASVFAVLDRN TTIEPENPDG YVPKKVKGQI SFSNVDFAYP TRPDVIIFQN
1001: FSIDIEDGKS TAIVGPSGSG KSTIISLIER FYDPLKGIVK IDGRDIRSCH LRSLRQHIAL VSQEPTLFAG TIRENIMYGG ASNKIDESEI IEAAKAANAH
1101: DFITSLSNGY DTCCGDRGVQ LSGGQKQRIA IARAVLKNPS VLLLDEATSA LDSQSESVVQ DALERLMVGR TSVVIAHRLS TIQKCDTIAV LENGAVVECG
1201: NHSSLLAKGP KGAYFSLVSL QRTLF

Arabidopsis Description

ABCB18ABC transporter B family member 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSJ5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.