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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:golgi, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86445 Canola plasma membrane 96.06 97.99
AT3G28345.1 Thale cress plasma membrane 89.68 91.77
CDY04018 Canola plasma membrane 88.89 90.89
CDX86437 Canola cytosol 9.85 83.89
CDX86442 Canola cytosol, mitochondrion, plastid 4.49 83.82
VIT_14s0066g02320.t01 Wine grape peroxisome 70.21 77.01
CDY21871 Canola endoplasmic reticulum, plasma membrane 4.33 76.39
Zm00001d053706_P002 Maize mitochondrion, plasma membrane 67.85 69.27
OQU84543 Sorghum endoplasmic reticulum, plasma membrane 66.98 68.77
Os02t0190300-01 Rice plasma membrane 67.38 68.67
VIT_19s0085g00060.t01 Wine grape endoplasmic reticulum, plasma membrane, plastid 65.48 67.84
TraesCS4A01G370600.1 Wheat plasma membrane 64.78 66.72
Os02t0190000-00 Rice plasma membrane 65.33 66.69
TraesCS7D01G068400.1 Wheat plasma membrane 64.3 66.23
Os02t0189800-00 Rice mitochondrion 38.69 65.64
CDX84897 Canola cytosol 5.83 62.71
EES05229 Sorghum plasma membrane 60.99 62.22
Zm00001d016794_P001 Maize plasma membrane 60.68 61.31
CDY64952 Canola peroxisome, plasma membrane, vacuole 37.59 48.43
CDY00109 Canola plasma membrane 44.76 45.62
CDY20012 Canola plasma membrane 44.76 45.33
CDY65012 Canola plasma membrane 44.6 45.17
CDX86408 Canola plasma membrane 43.97 45.11
CDY27639 Canola plasma membrane 42.24 44.01
CDX94395 Canola plasma membrane 41.77 42.95
CDY35168 Canola golgi, peroxisome, plasma membrane 36.72 42.71
CDX67881 Canola cytosol 40.19 42.46
CDY25095 Canola cytosol 40.35 42.45
CDY27510 Canola cytosol 40.03 42.37
CDY48003 Canola cytosol 39.48 42.03
CDX93393 Canola plasma membrane 40.5 41.96
CDY37953 Canola plasma membrane 40.5 41.96
CDX80072 Canola cytosol 39.4 41.74
CDY15432 Canola cytosol 40.11 41.59
CDX89380 Canola plasma membrane 41.69 41.49
CDY51307 Canola cytosol, peroxisome, plasma membrane 41.29 41.46
CDY24379 Canola plasma membrane 38.14 41.4
CDY20842 Canola endoplasmic reticulum, golgi, plasma membrane 37.98 41.13
CDY37776 Canola cytosol, peroxisome, plasma membrane 40.27 41.11
CDY46744 Canola cytosol, peroxisome, plasma membrane 43.18 40.96
CDX92739 Canola plasma membrane 40.03 40.93
CDX79704 Canola plasma membrane 43.03 40.72
CDX89963 Canola cytosol, nucleus, plasma membrane 40.5 40.66
CDY15249 Canola cytosol, peroxisome, plasma membrane 40.43 40.39
CDY58790 Canola peroxisome 39.16 40.37
CDY51560 Canola peroxisome 38.93 39.49
CDX84896 Canola plasma membrane 32.7 39.49
CDY42770 Canola golgi, plasma membrane, vacuole 35.15 39.3
GSMUA_Achr1P18340_001 Banana plasma membrane 60.44 36.66
CDY65312 Canola cytosol 36.96 33.52
CDY20443 Canola cytosol, mitochondrion, plasma membrane 36.88 33.4
CDY07647 Canola cytosol 36.8 33.33
CDY24958 Canola mitochondrion, plasma membrane, plastid 36.64 33.33
CDX76106 Canola cytosol, golgi, peroxisome 36.72 33.29
CDY53591 Canola cytosol, mitochondrion, plasma membrane 36.88 33.24
Protein Annotations
Gene3D:1.20.1560.10MapMan:24.1.3.1.1Gene3D:3.40.50.300GO:A0A078D7W8InterPro:AAA+_ATPaseInterPro:ABC1_TM_dom
InterPro:ABC1_TM_sfInterPro:ABC_transporter-likeInterPro:ABC_transporter_CSEnsemblPlants:CDX85192ProteinID:CDX85192ProteinID:CDX85192.1
ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021
GO:GO:0016787GO:GO:0016887GO:GO:0042626GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00142802001InterPro:IPR003439
InterPro:IPR011527InterPro:IPR036640InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF00664ScanProsite:PS00211
PFscan:PS50893PFscan:PS50929PANTHER:PTHR24221PANTHER:PTHR24221:SF381SMART:SM00382SUPFAM:SSF52540
SUPFAM:SSF90123TMHMM:TMhelixUniParc:UPI0004EDBCAESEG:seg::
Description
BnaC07g25030D
Coordinates
chrLK031841:-:69886..75229
Molecular Weight (calculated)
139051.0 Da
IEP (calculated)
8.458
GRAVY (calculated)
0.066
Length
1269 amino acids
Sequence
(BLAST)
0001: MGEVEGKETG KKTMKSFRSI RSIFMHADGV DWVLMGLGLI GAVGDGFTTP LVLLITSKLM NNLGGSSFNT ETFMQSISKN AVALLYVACG SWVVCFLEGY
0101: CWTRTGERQT ARMREKYLRA VLRQDVGYFD LHVTSTSDVI TSVSSDSFVI QDVLSEKLPN FLMSASMFVG SYIVGFILLW RLAIVGLPFI VLLVIPGLMY
0201: GRALISISSK IREEYNEAGF VAEQAISSVR TVYAFSGERK TISNFSAALQ GSVKLGIRQG LAKGITIGSN GITFAMWGFM SWYGSRMVMY HGAQGGTVFA
0301: VAAAVAIGGV SLGGGLSNLK YFFEAASVGE RIMEVINRVP KIDSNNPEGQ KLEKVRGEVE FKHVKFVYPS RPETSIFEDF CLRVPSGKTV ALVGGSGSGK
0401: STVISLLQRF YDPVAGEILI DGVSIDKLQV KWLRSQMGLV SQEPALFATS IKENILFGKE DATMDDVVEA AKASNAHTFI SQLPNGYETQ KCEHSLYSET
0501: KNKRKIHAFF FYEKQVGERG VQMSGGQKQR IAIARAIIKS PTILLLDEAT SALDSESERV VQEALENASI GRTTILIAHR LSTIRNADVI SVVRNGHVVE
0601: TGSHDKLMEN IDGQYASLVR LQQIEKEDSS VNMSVNVQTG PTLDPTKDLR SCSRVSTLSR SSSTNSVTGS SIVKNLAKVE KPPLPSFKRL LAMNLPEWKQ
0701: ALYGCISATL FGAIQPVYAF SLGSMVSVYF LTSHDEIKEK TRIYALSFVG LAVVSFLINI SQHYNFAYMG EYLTKRIRER MLSKVLTFEV GWFDQDENSS
0801: GSICSRLAKD ANVVRSLVGD RMALLVQTIS AVTIACTMGL VIAWRLALVM IAVQPLIIVC FYTRRVLLKN MSKKAIKAQD ESSKLAAEAV SNVRTITAFS
0901: SQERIMKMLE KAQENPRRES IRQSWFAGIG LAMSQSLTTC TWALDFWYGG RLIEDGYITA KALFETFMIL VSTGRVIADA GSMTTDLAKG SDAVGSVFAV
1001: LDRYTSIDPE DPEGYELERL TGRVEFLNVD FSYPTRPDVM IFTDFSIDID AAKSTAIVGP SGSGKSTVIG LIERFYDPVK GVVKIDGRDL RSYNLRSLRQ
1101: HIALVSQEPT LFAGTIRENI VYGRASDKID ESEIIEAASA ANAHDFITSL TDGYDTYCGD RGVQLSGGQK QRIAIARAVL KNPSVLLLDE ATSALDSQSE
1201: RVVQDALERV MVGRTSVVIA HRLSTIQNCD AIAVLDKGKL VERGTHSSLL AKGSTGVYFS LVSLQRTTC
Best Arabidopsis Sequence Match ( AT3G28345.1 )
(BLAST)
0001: MGKEEEKESG RNKMNCFGSV RSIFMHADGV DWLLMGLGLI GAVGDGFTTP LVLLITSKLM NNIGGSSFNT DTFMQSISKN SVALLYVACG SWVVCFLEGY
0101: CWTRTGERQT ARMREKYLRA VLRQDVGYFD LHVTSTSDVI TSVSSDSFVI QDVLSEKLPN FLMSASTFVG SYIVGFILLW RLAIVGLPFI VLLVIPGLMY
0201: GRALISISRK IREEYNEAGF VAEQAISSVR TVYAFSGERK TISKFSTALQ GSVKLGIKQG LAKGITIGSN GITFAMWGFM SWYGSRMVMY HGAQGGTVFA
0301: VAAAIAIGGV SLGGGLSNLK YFFEAASVGE RIMEVINRVP KIDSDNPDGH KLEKIRGEVE FKNVKFVYPS RLETSIFDDF CLRVPSGKTV ALVGGSGSGK
0401: STVISLLQRF YDPLAGEILI DGVSIDKLQV KWLRSQMGLV SQEPALFATT IKENILFGKE DASMDDVVEA AKASNAHNFI SQLPNGYETQ VGERGVQMSG
0501: GQKQRIAIAR AIIKSPTILL LDEATSALDS ESERVVQEAL ENASIGRTTI LIAHRLSTIR NADVISVVKN GHIVETGSHD ELMENIDGQY STLVHLQQIE
0601: KQDINVSVKI GPISDPSKDI RNSSRVSTLS RSSSANSVTG PSTIKNLSED NKPQLPSFKR LLAMNLPEWK QALYGCISAT LFGAIQPAYA YSLGSMVSVY
0701: FLTSHDEIKE KTRIYALSFV GLAVLSFLIN ISQHYNFAYM GEYLTKRIRE RMLSKVLTFE VGWFDRDENS SGAICSRLAK DANVVRSLVG DRMALVVQTV
0801: SAVTIAFTMG LVIAWRLALV MIAVQPVIIV CFYTRRVLLK SMSKKAIKAQ DESSKLAAEA VSNVRTITAF SSQERIMKML EKAQESPRRE SIRQSWFAGF
0901: GLAMSQSLTS CTWALDFWYG GRLIQDGYIT AKALFETFMI LVSTGRVIAD AGSMTTDLAK GSDAVGSVFA VLDRYTSIDP EDPDGYETER ITGQVEFLDV
1001: DFSYPTRPDV IIFKNFSIKI EEGKSTAIVG PSGSGKSTII GLIERFYDPL KGIVKIDGRD IRSYHLRSLR RHIALVSQEP TLFAGTIREN IIYGGVSDKI
1101: DEAEIIEAAK AANAHDFITS LTEGYDTYCG DRGVQLSGGQ KQRIAIARAV LKNPSVLLLD EATSALDSQS ERVVQDALER VMVGRTSVVI AHRLSTIQNC
1201: DAIAVLDKGK LVERGTHSSL LSKGPTGIYF SLVSLQTTSG
Arabidopsis Description
ABCB15ABC transporter B family member 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHD1]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.