CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27510	Canola	cytosol	94.74	94.66
CDY48003	Canola	cytosol	91.4	91.86
Bra004484.1-P	Field mustard	cytosol	98.41	91.82
CDY37776	Canola	cytosol, peroxisome, plasma membrane	94.74	91.31
AT2G47000.1	Thale cress	cytosol, peroxisome, plasma membrane	92.99	86.63
CDX67881	Canola	cytosol	84.31	84.1
CDY25095	Canola	cytosol	84.14	83.58
Os05t0137200-01	Rice	plasma membrane	24.29	74.05
GSMUA_Achr8P29860_001	Banana	endoplasmic reticulum	67.03	72.6
CDX89963	Canola	cytosol, nucleus, plasma membrane	74.62	70.73
CDY15249	Canola	cytosol, peroxisome, plasma membrane	74.71	70.47
KRH33644	Soybean	cytosol, peroxisome, plasma membrane	74.87	69.97
VIT_07s0005g02660.t01	Wine grape	cytosol, peroxisome, plasma membrane	75.54	69.78
KRH69152	Soybean	cytosol, peroxisome, plasma membrane	74.62	69.73
CDY51307	Canola	cytosol, peroxisome, plasma membrane	73.21	69.38
CDY15432	Canola	cytosol	70.7	69.2
PGSC0003DMT400018820	Potato	cytosol, peroxisome, plasma membrane	74.04	68.92
KRH68334	Soybean	cytosol, peroxisome, plasma membrane	72.37	67.58
Solyc06g009280.1.1	Tomato	cytosol, peroxisome, plasma membrane	71.95	66.87
CDY24379	Canola	plasma membrane	64.77	66.38
PGSC0003DMT400018812	Potato	cytosol, peroxisome, plasma membrane	67.03	66.25
GSMUA_Achr1P25070_001	Banana	plasma membrane	49.83	65.89
CDY20842	Canola	endoplasmic reticulum, golgi, plasma membrane	64.27	65.7
CDY58790	Canola	peroxisome	67.03	65.23
OQU77362	Sorghum	mitochondrion, plasma membrane	62.35	64.73
CDY51560	Canola	peroxisome	66.86	64.03
KXG32330	Sorghum	plastid	68.11	63.75
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	67.7	63.46
Solyc06g009290.2.1	Tomato	nucleus	73.54	62.93
CDY35168	Canola	golgi, peroxisome, plasma membrane	56.76	62.33
TraesCS1B01G099000.1	Wheat	cytosol, peroxisome, plasma membrane	66.03	62.04
TraesCS1A01G081300.1	Wheat	unclear	65.94	61.91
TraesCS1D01G082900.2	Wheat	cytosol, peroxisome, plasma membrane	65.78	61.76
HORVU1Hr1G017460.3	Barley	plasma membrane	65.69	61.34
CDX84897	Canola	cytosol	6.01	61.02
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	67.53	60.6
CDX86437	Canola	cytosol	7.35	59.06
GSMUA_Achr9P16700_001	Banana	plasma membrane	61.6	58.11
CDX86442	Canola	cytosol, mitochondrion, plastid	3.17	55.88
CDX86408	Canola	plasma membrane	47.16	45.67
CDY00109	Canola	plasma membrane	46.58	44.82
CDY65012	Canola	plasma membrane	46.83	44.77
CDY20012	Canola	plasma membrane	46.41	44.37
CDX93393	Canola	plasma membrane	44.07	43.1
CDY37953	Canola	plasma membrane	43.99	43.02
CDX94395	Canola	plasma membrane	43.91	42.63
CDX92739	Canola	plasma membrane	43.49	41.98
CDY27639	Canola	plasma membrane	41.9	41.22
CDX89380	Canola	plasma membrane	43.82	41.18
CDX86445	Canola	plasma membrane	41.49	39.95
CDY04018	Canola	plasma membrane	40.98	39.56
CDY42770	Canola	golgi, plasma membrane, vacuole	37.4	39.47
CDX85192	Canola	plasma membrane	41.74	39.4
CDY46744	Canola	cytosol, peroxisome, plasma membrane	43.49	38.94
CDX79704	Canola	plasma membrane	43.57	38.93
CDX84896	Canola	plasma membrane	32.8	37.39
CDY64952	Canola	peroxisome, plasma membrane, vacuole	27.96	34.01
CDX76106	Canola	cytosol, golgi, peroxisome	38.98	33.36
CDY24958	Canola	mitochondrion, plasma membrane, plastid	38.81	33.33
CDY07647	Canola	cytosol	38.98	33.33
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	38.9	33.26
CDY65312	Canola	cytosol	38.81	33.24
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	38.81	33.03
CDY21871	Canola	endoplasmic reticulum, plasma membrane	1.59	26.39

Protein Annotations

Gene3D:1.20.1560.10	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	GO:A0A078CTL4	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	EnsemblPlants:CDX80072	ProteinID:CDX80072	ProteinID:CDX80072.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00132963001	InterPro:IPR003439	InterPro:IPR011527
InterPro:IPR036640	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893
PFscan:PS50929	PANTHER:PTHR24221	PANTHER:PTHR24221:SF292	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123
TMHMM:TMhelix	UniParc:UPI0004EDDB31	SEG:seg	:	:	:

Description

BnaA05g00840DABC transporter B family member 4 [Source:Projected from Arabidopsis thaliana (AT2G47000) UniProtKB/Swiss-Prot;Acc:O80725]

Coordinates

chrLK031819:-:1664128..1669726

Molecular Weight (calculated)

129672.0 Da

IEP (calculated)

5.912

GRAVY (calculated)

0.122

Length

1198 amino acids

Sequence
(BLAST)

0001: MASESGLNGD ANIVEEVSET KRSRDEEEKE DKEVKKNNNE DHEKTKTVPF YKLFAFADSF DFLLMTLGTL GSIGNGLGFP IMTILFGDLV DAFGENQNDS
0101: NVADKVSKVS LKFVWLGIGT FAAAFLQLSG WMISGERQAA RIRSMYLKTI LRQDIAFFDV DTNTGEVVGR MSGDTVLIQD AMGEKVGKAI QLLATFVGGF
0201: VIAFIRGWLL TLVMLSSIPL LVMAGAGLAI VITRTASRGQ TAYAKAAVVV EQTIGSIRTV ASFTGEKQAI SNYNKHLVTA YKAGVIEGGS TGLGLGTLFL
0301: VVFCSYALAV WYGGKLILDK GYTGGQVLNI IISVLTGSMS LGQASPCLTA FAAGQAAAYK MFETIERRPD IDSYSTDGKV LDDIKGDIEL KDVYFTYPAR
0401: PDEQIFCGFS LFISSGTTVA LVGQSGSGKS TVVSLIERFY DPQAGEVIID GVNLKEFQLK WIRSKIGLVS QEPVLFTSSI KDNIAYGKED ATLEEIKAAA
0501: ELANASKFVD KLPQGLDTMV GEHGTQLSGG QKQRIAVARA ILKDPRILLL DEATSALDAE SERVVQEALD RIMVNRTTIV VAHRLRTVRN ADTIAVIHQG
0601: KIVEKGSHTE LLKDPEGAYS QLIRLQEDTK PEETQAGERK MSSIESFKQS SFRNSVIKAF FKPPKELKED TSFWAIIFMV LGFASVIAYP AQTFFFSIAG
0701: CKLVQRIRSM CFEKVVHMEV GWFDESEHSS GTIGARLSAD AAAIRGLVGD ALAQMVQNLS SILAGLIIAF LACWQLAFVV LAMLPLIALN GFLYMKFMKG
0801: FSADAKKMYG EASQVANDAV GSIRTVASFC AEDKVMNMYT KKCEGPMKTG IRQGIVSGIG FGVSFFVLFA SYATSFYVGA QLVDDGKTTF DSVFRVFFAL
0901: TMAAIAISQS SSLSPDSSKA DIAAASIFGI IDRESKIDPS VESGRVLDTV KGDIELRHVS FKYPSRPDVQ IFQDLCLSIR AGKTVALVGE SGSGKSTVIA
1001: LLQRFYDPDS GEITLDGVEI KTLRLKWLRQ QTGLVSQEPI LFNETIRANI AYGKGGDASE SEIVSAGELS NAHGFISGLQ QGYDTMVGER GIQLSGGQKQ
1101: RVAIARAIVK DPKVLLLDEA TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIV EKGKHESLIN IKDGVYASLV QLHLSAAS

Best Arabidopsis Sequence Match ( AT2G47000.1 )
(BLAST)

0001: MASESGLNGD PNILEEVSET KRDKEEEEEV KKTEKKDEEH EKTKTVPFYK LFAFADSFDF LLMILGTLGS IGNGLGFPLM TLLFGDLIDA FGENQTNTTD
0101: KVSKVALKFV WLGIGTFAAA FLQLSGWMIS GERQAARIRS LYLKTILRQD IAFFDIDTNT GEVVGRMSGD TVLIQDAMGE KVGKAIQLLA TFVGGFVIAF
0201: VRGWLLTLVM LSSIPLLVMA GALLAIVIAK TASRGQTAYA KAATVVEQTI GSIRTVASFT GEKQAISNYN KHLVTAYKAG VIEGGSTGLG LGTLFLVVFC
0301: SYALAVWYGG KLILDKGYTG GQVLNIIIAV LTGSMSLGQT SPCLSAFAAG QAAAYKMFET IERRPNIDSY STNGKVLDDI KGDIELKDVY FTYPARPDEQ
0401: IFRGFSLFIS SGTTVALVGQ SGSGKSTVVS LIERFYDPQA GDVLIDGINL KEFQLKWIRS KIGLVSQEPV LFTASIKDNI AYGKEDATTE EIKAAAELAN
0501: ASKFVDKLPQ GLDTMVGEHG TQLSGGQKQR IAVARAILKD PRILLLDEAT SALDAESERV VQEALDRIMV NRTTVVVAHR LSTVRNADMI AVIHQGKIVE
0601: KGSHTELLKD PEGAYSQLIR LQEEKKSDEN AAEEQKMSSI ESFKQSSLRK SSLGRSLSKG GSSRGNSSRH SFNMFGFPAG IDGNVVQDQE EDDTTQPKTE
0701: PKKVSIFRIA ALNKPEIPVL ILGSISAAAN GVILPIFGIL ISSVIKAFFQ PPKKLKEDTS FWAIIFMVLG FASIIAYPAQ TFFFAIAGCK LVQRIRSMCF
0801: EKVVHMEVGW FDEPENSSGT IGARLSADAA TIRGLVGDSL AQTVQNLSSI LAGLIIAFLA CWQLAFVVLA MLPLIALNGF LYMKFMKGFS ADAKKMYGEA
0901: SQVANDAVGS IRTVASFCAE DKVMNMYSKK CEGPMKNGIR QGIVSGIGFG FSFFVLFSSY AASFYVGARL VDDGKTTFDS VFRVFFALTM AAMAISQSSS
1001: LSPDSSKADV AAASIFAIMD RESKIDPSVE SGRVLDNVKG DIELRHVSFK YPARPDVQIF QDLCLSIRAG KTVALVGESG SGKSTVIALL QRFYDPDSGE
1101: ITLDGVEIKS LRLKWLRQQT GLVSQEPILF NETIRANIAY GKGGDASESE IVSSAELSNA HGFISGLQQG YDTMVGERGI QLSGGQKQRV AIARAIVKDP
1201: KVLLLDEATS ALDAESERVV QDALDRVMVN RTTIVVAHRL STIKNADVIA VVKNGVIVEK GKHDTLINIK DGVYASLVQL HLTAAS

Arabidopsis Description

ABCB4ABC transporter B family member 4 [Source:UniProtKB/Swiss-Prot;Acc:O80725]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.