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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX80072 Canola cytosol 91.82 98.41
Bra040475.1-P Field mustard cytosol 95.17 94.95
AT2G47000.1 Thale cress cytosol, peroxisome, plasma membrane 93.22 93.08
Bra003490.1-P Field mustard cytosol, nucleus, plasma membrane 83.41 82.89
Os05t0137200-01 Rice plasma membrane 22.74 74.3
KRH33644 Soybean cytosol, peroxisome, plasma membrane 73.6 73.71
KRH69152 Soybean cytosol, peroxisome, plasma membrane 73.44 73.56
VIT_07s0005g02660.t01 Wine grape cytosol, peroxisome, plasma membrane 74.3 73.55
GSMUA_Achr8P29860_001 Banana endoplasmic reticulum 63.08 73.24
Bra033331.1-P Field mustard cytosol, nucleus, plasma membrane 71.81 72.83
Bra030503.1-P Field mustard cytosol, peroxisome, plasma membrane 72.27 72.73
PGSC0003DMT400018820 Potato cytosol, peroxisome, plasma membrane 72.66 72.49
KRH68334 Soybean cytosol, peroxisome, plasma membrane 71.34 71.4
Solyc06g009280.1.1 Tomato cytosol, peroxisome, plasma membrane 70.79 70.52
PGSC0003DMT400018812 Potato cytosol, peroxisome, plasma membrane 65.97 69.88
Bra002094.1-P Field mustard cytosol, peroxisome, plasma membrane 66.59 69.46
GSMUA_Achr1P25070_001 Banana plasma membrane 48.52 68.76
OQU77362 Sorghum mitochondrion, plasma membrane 61.29 68.2
Bra003445.1-P Field mustard peroxisome 66.59 68.18
KXG32330 Sorghum plastid 66.82 67.03
Zm00001d008178_P001 Maize cytosol, peroxisome, plasma membrane, plastid 66.36 66.67
Solyc06g009290.2.1 Tomato nucleus 72.27 66.29
TraesCS1B01G099000.1 Wheat cytosol, peroxisome, plasma membrane 64.8 65.25
TraesCS1A01G081300.1 Wheat unclear 64.72 65.13
TraesCS1D01G082900.2 Wheat cytosol, peroxisome, plasma membrane 64.56 64.97
HORVU1Hr1G017460.3 Barley plasma membrane 64.49 64.54
Bra012621.1-P Field mustard plasma membrane 62.38 64.23
Zm00001d040562_P002 Maize cytosol, peroxisome, plasma membrane 66.2 63.67
Bra032855.1-P Field mustard cytosol 5.53 60.17
GSMUA_Achr9P16700_001 Banana plasma membrane 59.5 60.16
Bra017539.1-P Field mustard plasma membrane 46.03 57.32
Bra025359.1-P Field mustard plasma membrane 45.87 47.04
Bra039042.1-P Field mustard plasma membrane 45.25 46.41
Bra013936.1-P Field mustard plasma membrane 42.06 43.76
Bra019135.1-P Field mustard plasma membrane 42.13 43.59
Bra019907.1-P Field mustard plasma membrane 41.59 43.59
Bra032856.1-P Field mustard plasma membrane 41.51 43.02
Bra025326.1-P Field mustard plasma membrane 40.26 41.56
Bra025328.1-P Field mustard endoplasmic reticulum, golgi 34.11 40.97
Bra017216.1-P Field mustard cytosol, nucleus, plasma membrane 42.13 40.43
Bra023087.1-P Field mustard cytosol, nucleus, plasma membrane 42.06 40.33
Bra025331.1-P Field mustard plasma membrane 35.36 39.86
Bra025425.1-P Field mustard peroxisome, plasma membrane, vacuole 37.69 39.0
Bra000136.1-P Field mustard cytosol, mitochondrion, peroxisome 38.08 34.85
Bra014756.1-P Field mustard cytosol, golgi, peroxisome 37.93 34.79
Bra005036.1-P Field mustard mitochondrion 38.08 34.73
Protein Annotations
Gene3D:1.20.1560.10MapMan:24.1.3.1.1Gene3D:3.40.50.300InterPro:AAA+_ATPaseInterPro:ABC1_TM_domInterPro:ABC1_TM_sf
InterPro:ABC_transporter-likeInterPro:ABC_transporter_CSEnsemblPlantsGene:Bra004484EnsemblPlants:Bra004484.1EnsemblPlants:Bra004484.1-PGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016887
GO:GO:0042626GO:GO:0055085InterPro:IPR003439InterPro:IPR011527InterPro:IPR036640UniProt:M4CJV0
InterPro:P-loop_NTPasePFAM:PF00005PFAM:PF00664ScanProsite:PS00211PFscan:PS50893PFscan:PS50929
PANTHER:PTHR24221PANTHER:PTHR24221:SF292SMART:SM00382SUPFAM:SSF52540SUPFAM:SSF90123TMHMM:TMhelix
UniParc:UPI00025472C3SEG:seg::::
Description
AT2G47000 (E=0.0) MDR4, PGP4, ABCB4, ATPGP4 | ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase
Coordinates
chrA05:+:370135..375843
Molecular Weight (calculated)
138678.0 Da
IEP (calculated)
6.694
GRAVY (calculated)
0.110
Length
1284 amino acids
Sequence
(BLAST)
0001: MASESGLNGD ANIVEEVSET KRSRDEEEKE DKEVKKNNNE DHEKTKTVPF YKLFAFADSL DFLLMTLGTL GSIGNGLGFP IMTILFGDLV DAFGENQNDS
0101: NVADKVSKVS LKFVWLGIGT FAAAFLQLSG WMISGERQAA RIRSMYLKTI LRQDIAFFDV DTNTGEVVGR MSGDTVLIQD AMGEKVGKAI QLLATFVGGF
0201: VIAFIRGWLL TLVMLSSIPL LVMAGAGLAI VIARTASRGQ TAYAKAAVVV EQTIGSIRTV ASFTGEKQAI SNYNKHLVTA YKAGVMEGGS TGLGLGTLFL
0301: VVFCSYALAV WYGGKLILDK GYTGGQVLNI IISVLTGSMS LGQASPCLTA FAAGQAAAYK MFETIERRPD IDSYSTDGKV LDDIKGDIEL KDVYFTYPAR
0401: PDEQIFRGFS LFISSGTTVA LVGQSGSGKS TVVSLIERFY DPQAGEVIID GVNLKEFQLK WIRSKIGLVS QEPVLFTSSI KDNIAYGKED ATLEEIKAAA
0501: ELANASKFVD KLPQGLDTMV GEHGTQLSGG QKQRIAVARA ILKDPRILLL DEATSALDAE SERVVQEALD RIMVNRTTVV VAHRLSTVRN ADTIAVIHQG
0601: KIVEKGSHAE LLKDPEGAYS QLIRLQEDKK HEEKKPEELS SIESFKQSSL RKSSLGRSLS KGGSSRGNSS RHSFNMFGFP SGIEGNDVVQ DQEEPKTKPK
0701: KVSIRRIAAL NKPEIPVLIL GTISAAANGV ILPIFGILIA SVIKAFFKPP KELKEDTSFW AIIFMVLGFA SVIAYPAQTF FFSIAGCKLV QRIRSMCFEK
0801: VVHMEVGWFD ESEHSSGTIG ARLSADAAAI RGLVGDALAQ MVQNLSSILA GLIIAFLACW QLAFVVLAML PLIALNGFLY MKFMKGFSAD AKKMYGEASQ
0901: VANDAVGSIR TVASFCAEDK VMNMYTKKCE GPMKTGIRQG IVSGIGFGVS FFVLFASYAT SFYVGAQLVD DGKTTFDSVF RVFFALTMAA IAISQSSSLS
1001: PDSSKADIAA ASIFGIIDRE SKIDPSVESG RVLDTVKGDI ELRHVSFKYP SRPDVQIFQD LCLSIRAGKT VALVGESGSG KSTVIALLQR FYDPDSGEIT
1101: LDGVEIKTLR LKWLRQQTGL VSQEPILFNE TIRANIAYGK GGDASESEIV SAAELSNAHG FISGLQQGYD TMVGERGIQL SGGQKQRVAI ARAIVKDPKV
1201: LLLDEATSAL DAESERVVQD ALDRVMVNRT TIVVAHRLST IKNADVIAVV KNGVIVEKGK HESLINIKDG VYASLVQLHL SAAS
Best Arabidopsis Sequence Match ( AT2G47000.1 )
(BLAST)
0001: MASESGLNGD PNILEEVSET KRDKEEEEEV KKTEKKDEEH EKTKTVPFYK LFAFADSFDF LLMILGTLGS IGNGLGFPLM TLLFGDLIDA FGENQTNTTD
0101: KVSKVALKFV WLGIGTFAAA FLQLSGWMIS GERQAARIRS LYLKTILRQD IAFFDIDTNT GEVVGRMSGD TVLIQDAMGE KVGKAIQLLA TFVGGFVIAF
0201: VRGWLLTLVM LSSIPLLVMA GALLAIVIAK TASRGQTAYA KAATVVEQTI GSIRTVASFT GEKQAISNYN KHLVTAYKAG VIEGGSTGLG LGTLFLVVFC
0301: SYALAVWYGG KLILDKGYTG GQVLNIIIAV LTGSMSLGQT SPCLSAFAAG QAAAYKMFET IERRPNIDSY STNGKVLDDI KGDIELKDVY FTYPARPDEQ
0401: IFRGFSLFIS SGTTVALVGQ SGSGKSTVVS LIERFYDPQA GDVLIDGINL KEFQLKWIRS KIGLVSQEPV LFTASIKDNI AYGKEDATTE EIKAAAELAN
0501: ASKFVDKLPQ GLDTMVGEHG TQLSGGQKQR IAVARAILKD PRILLLDEAT SALDAESERV VQEALDRIMV NRTTVVVAHR LSTVRNADMI AVIHQGKIVE
0601: KGSHTELLKD PEGAYSQLIR LQEEKKSDEN AAEEQKMSSI ESFKQSSLRK SSLGRSLSKG GSSRGNSSRH SFNMFGFPAG IDGNVVQDQE EDDTTQPKTE
0701: PKKVSIFRIA ALNKPEIPVL ILGSISAAAN GVILPIFGIL ISSVIKAFFQ PPKKLKEDTS FWAIIFMVLG FASIIAYPAQ TFFFAIAGCK LVQRIRSMCF
0801: EKVVHMEVGW FDEPENSSGT IGARLSADAA TIRGLVGDSL AQTVQNLSSI LAGLIIAFLA CWQLAFVVLA MLPLIALNGF LYMKFMKGFS ADAKKMYGEA
0901: SQVANDAVGS IRTVASFCAE DKVMNMYSKK CEGPMKNGIR QGIVSGIGFG FSFFVLFSSY AASFYVGARL VDDGKTTFDS VFRVFFALTM AAMAISQSSS
1001: LSPDSSKADV AAASIFAIMD RESKIDPSVE SGRVLDNVKG DIELRHVSFK YPARPDVQIF QDLCLSIRAG KTVALVGESG SGKSTVIALL QRFYDPDSGE
1101: ITLDGVEIKS LRLKWLRQQT GLVSQEPILF NETIRANIAY GKGGDASESE IVSSAELSNA HGFISGLQQG YDTMVGERGI QLSGGQKQRV AIARAIVKDP
1201: KVLLLDEATS ALDAESERVV QDALDRVMVN RTTIVVAHRL STIKNADVIA VVKNGVIVEK GKHDTLINIK DGVYASLVQL HLTAAS
Arabidopsis Description
ABCB4ABC transporter B family member 4 [Source:UniProtKB/Swiss-Prot;Acc:O80725]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.