Factsheet for Bra013936.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94395	Canola	plasma membrane	99.19	99.19
CDX89380	Canola	plasma membrane	99.43	96.24
AT4G25960.1	Thale cress	plasma membrane	91.57	88.77
Bra019135.1-P	Field mustard	plasma membrane	88.17	87.67
Bra019907.1-P	Field mustard	plasma membrane	78.77	79.35
VIT_02s0012g01660.t01	Wine grape	plasma membrane	78.36	77.8
KRH74394	Soybean	plasma membrane	77.31	76.56
KRH39563	Soybean	peroxisome	76.99	76.31
Solyc08g076720.2.1	Tomato	unclear	76.26	74.86
PGSC0003DMT400045176	Potato	peroxisome	76.01	74.62
KRH45417	Soybean	plasma membrane	75.61	74.4
EES05688	Sorghum	plasma membrane	74.47	72.94
Zm00001d051514_P002	Maize	mitochondrion	73.99	72.35
Os02t0693700-02	Rice	plasma membrane	73.66	71.91
TraesCS6B01G291900.1	Wheat	peroxisome	73.18	71.5
TraesCS6D01G250000.1	Wheat	golgi	73.01	71.45
TraesCS6A01G264900.3	Wheat	golgi	73.1	71.25
HORVU6Hr1G067170.3	Barley	endoplasmic reticulum, vacuole	52.43	67.68
HORVU6Hr1G067200.1	Barley	plastid	73.1	66.57
Bra032855.1-P	Field mustard	cytosol	6.16	64.41
Bra039042.1-P	Field mustard	plasma membrane	50.97	50.24
Bra025359.1-P	Field mustard	plasma membrane	50.81	50.08
Bra032856.1-P	Field mustard	plasma membrane	49.27	49.07
Bra017216.1-P	Field mustard	cytosol, nucleus, plasma membrane	49.84	45.96
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	49.68	45.78
Bra012621.1-P	Field mustard	plasma membrane	44.41	43.95
Bra025328.1-P	Field mustard	endoplasmic reticulum, golgi	37.44	43.22
Bra003445.1-P	Field mustard	peroxisome	43.52	42.82
Bra030503.1-P	Field mustard	cytosol, peroxisome, plasma membrane	44.08	42.63
Bra002094.1-P	Field mustard	cytosol, peroxisome, plasma membrane	42.46	42.57
Bra025326.1-P	Field mustard	plasma membrane	42.63	42.28
Bra003490.1-P	Field mustard	cytosol, nucleus, plasma membrane	44.25	42.26
Bra033331.1-P	Field mustard	cytosol, nucleus, plasma membrane	43.35	42.26
Bra004484.1-P	Field mustard	cytosol	43.76	42.06
Bra040475.1-P	Field mustard	cytosol	43.6	41.8
Bra025331.1-P	Field mustard	plasma membrane	38.33	41.53
GSMUA_Achr4P17010_001	Banana	peroxisome	35.98	40.18
Bra025425.1-P	Field mustard	peroxisome, plasma membrane, vacuole	40.19	39.97
Bra017539.1-P	Field mustard	plasma membrane	32.74	39.19
Bra000136.1-P	Field mustard	cytosol, mitochondrion, peroxisome	40.92	35.99
Bra005036.1-P	Field mustard	mitochondrion	41.0	35.94
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	40.44	35.64

Protein Annotations

MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	EnsemblPlantsGene:Bra013936	EnsemblPlants:Bra013936.1	EnsemblPlants:Bra013936.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887	GO:GO:0042626
GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:M4DBS6	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221
PANTHER:PTHR24221:SF415	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI0002546BE1
SEG:seg	:	:	:	:	:

Description

AT4G25960 (E=0.0) PGP2 | PGP2 (P-GLYCOPROTEIN 2); ATPase, coupled to transmembrane movement of substances

Coordinates

chrA01:+:8540646..8546490

Molecular Weight (calculated)

135551.0 Da

IEP (calculated)

9.340

GRAVY (calculated)

0.122

Length

1234 amino acids

Sequence
(BLAST)

0001: MEASSDPATK KEKQKATPKV SLLKLFSFAD FYDCVLMTLG SIGACIHGAS VPVFFIFFGK LINIIGLAYL YPHLASHKVA KYSLDFVYLS VAILFSSWLE
0101: VACWMHTGER QAAKMRRAYL RSMLSQDISL FDTEASTGEV ISAITSDILV VQDALSEKVG NFLHYISRFI AGFAIGFSSV WQISLVTLSI VPLIALAGGI
0201: YAFVAIGLIA RVRKSYIKAG EIAEEVIGNV RTVQAFTGEE RAVKLYREAL QNTFKYGRKA GLTKGLGLGS LHCVLFLSWG LPVWFTSVVV HKDIADGGKS
0301: FTTMLNVVIA GLSLGQAAPD ISAFVRAKAA AYPIFKMIER DTAAKTSAKT GRRLGKVDGH IQFKNVTFSY PSRPDVVIFD KLNISIPAGK IVALVGGSGS
0401: GKSTVISLIE RFYEPNSGAV WLDGNDIKDL DIKWLRGQIG LVNQEPALFA TTIRENIMYG KDDSTNEELG RAAKLSEAIS FINNLPEGFE TQVGERGIQL
0501: SGGQKQRIAI SRAIVKNPSI LLLDEATSAL DAESEKSVQE ALDRVMVGRT TVVVAHRLST VRNADIIAVV HEGKIVEFGN HENLIANPDG AYSALLRLQE
0601: AASLQRNPSL TRTLSRQQSV KYSGDLSRTR TSFCSDRDSV TRQDGAEPTK KTKVTVGRLY SMIRPDWMYG LCGTICAFIA GSQMPLFALG VSHSLVSYYE
0701: KDWVDTQKEV KKIAILFCCA SAITLIVYTI EHICFGTMGE RLTLRVREKM FSAILRNEIG WFDEVDNTSS MLASRLESDA TLLKTIVVDR STILLQNLGL
0801: VVTSFVISFM LNWRLTLVVV ATYPLVISGH ISEKLFMQGY GGNLSKAYLK ANMLAGESVS NIRTVAAFCA EDKILELYSR ELLEPSKRSF RRGQTAGLFY
0901: GISQFFIFSS YGLALWYGST LMDKGLSNFK SVMKTFMVLI VTALAMGETL ALAPDLLKGN QMVASVFEIL DRKTQIVGET SEELTNVEGM IELKGVHFSY
1001: PSRPDVVIFK DFDLIVRSGK SMALVGQSGS GKSSVISLIL RFYDPTAGKV MIEGKDIKKL DLKALRKHIG LVQQEPALFA TTIYENILYG NERATQSEVI
1101: EAATLANAHS FITSLPQGYS TKVGERGVQM SGGQRQRIAI ARAILRNPEI LLLDEATSAL DIESERVVQQ ALDRLMTNRA TVVVAHRLST IQNADTISVL
1201: HGGKIVEQGS HHRLVQNKTG PYFKLISLQQ QQHP

Best Arabidopsis Sequence Match ( AT4G25960.1 )
(BLAST)

0001: MYISLIFFLS NHFPPLISIP IFIFLSFSSP TNYTHLKLKK MQPSGDPAPE KEKEMTQPKV SLLKLFSFAD FYDCVLMTLG SVGACIHGAS VPIFFIFFGK
0101: LINIIGLAYL FPKQASHRVA KYSLDFVYLS VAILFSSWLE VACWMHTGER QAAKMRRAYL RSMLSQDISL FDTEASTGEV ISAITSDILV VQDALSEKVG
0201: NFLHYISRFI AGFAIGFTSV WQISLVTLSI VPLIALAGGI YAFVAIGLIA RVRKSYIKAG EIAEEVIGNV RTVQAFTGEE RAVRLYREAL ENTYKYGRKA
0301: GLTKGLGLGS MHCVLFLSWA LLVWFTSVVV HKDIADGGKS FTTMLNVVIA GLSLGQAAPD ISAFVRAKAA AYPIFKMIER NTVTKTSAKS GRKLGKVDGH
0401: IQFKDATFSY PSRPDVVIFD RLNLAIPAGK IVALVGGSGS GKSTVISLIE RFYEPISGAV LLDGNNISEL DIKWLRGQIG LVNQEPALFA TTIRENILYG
0501: KDDATAEEIT RAAKLSEAIS FINNLPEGFE TQVGERGIQL SGGQKQRIAI SRAIVKNPSI LLLDEATSAL DAESEKSVQE ALDRVMVGRT TVVVAHRLST
0601: VRNADIIAVV HEGKIVEFGN HENLISNPDG AYSSLLRLQE TASLQRNPSL NRTLSRPHSI KYSRELSRTR SSFCSERESV TRPDGADPSK KVKVTVGRLY
0701: SMIRPDWMYG VCGTICAFIA GSQMPLFALG VSQALVSYYS GWDETQKEIK KIAILFCCAS VITLIVYTIE HICFGTMGER LTLRVRENMF RAILKNEIGW
0801: FDEVDNTSSM LASRLESDAT LLKTIVVDRS TILLQNLGLV VTSFIIAFIL NWRLTLVVLA TYPLVISGHI SEKLFMQGYG GDLNKAYLKA NMLAGESVSN
0901: IRTVAAFCAE EKILELYSRE LLEPSKSSFR RGQIAGLFYG VSQFFIFSSY GLALWYGSTL MDKGLAGFKS VMKTFMVLIV TALAMGETLA LAPDLLKGNQ
1001: MVASVFEILD RKTQIVGETS EELNNVEGTI ELKGVHFSYP SRPDVVIFRD FDLIVRAGKS MALVGQSGSG KSSVISLILR FYDPTAGKVM IEGKDIKKLD
1101: LKALRKHIGL VQQEPALFAT TIYENILYGN EGASQSEVVE SAMLANAHSF ITSLPEGYST KVGERGVQMS GGQRQRIAIA RAILKNPAIL LLDEATSALD
1201: VESERVVQQA LDRLMANRTT VVVAHRLSTI KNADTISVLH GGKIVEQGSH RKLVLNKSGP YFKLISLQQQ QQP

Arabidopsis Description

ABCB2ABC transporter B family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPK2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.