Subcellular Localization
min:
: max
Winner_takes_all: unclear
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
unclear:
26455813
|
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045176 | Potato | peroxisome | 97.06 | 97.06 |
| VIT_02s0012g01660.t01 | Wine grape | plasma membrane | 79.79 | 80.69 |
| KRH74394 | Soybean | plasma membrane | 78.68 | 79.37 |
| KRH39563 | Soybean | peroxisome | 78.44 | 79.2 |
| KRH45417 | Soybean | plasma membrane | 76.37 | 76.56 |
| CDX94395 | Canola | plasma membrane | 74.94 | 76.34 |
| Bra013936.1-P | Field mustard | plasma membrane | 74.86 | 76.26 |
| AT4G25960.1 | Thale cress | plasma membrane | 76.45 | 75.49 |
| AT1G10680.1 | Thale cress | plasma membrane | 73.67 | 75.47 |
| CDX93393 | Canola | plasma membrane | 72.63 | 74.53 |
| CDY37953 | Canola | plasma membrane | 72.63 | 74.53 |
| Os02t0693700-02 | Rice | plasma membrane | 74.46 | 74.05 |
| Bra019907.1-P | Field mustard | plasma membrane | 72.16 | 74.04 |
| CDX89380 | Canola | plasma membrane | 75.1 | 74.04 |
| CDX92739 | Canola | plasma membrane | 72.71 | 73.65 |
| EES05688 | Sorghum | plasma membrane | 73.75 | 73.57 |
| Bra019135.1-P | Field mustard | plasma membrane | 72.39 | 73.33 |
| Zm00001d051514_P002 | Maize | mitochondrion | 73.19 | 72.9 |
| TraesCS6D01G250000.1 | Wheat | golgi | 73.11 | 72.88 |
| TraesCS6B01G291900.1 | Wheat | peroxisome | 73.19 | 72.84 |
| TraesCS6A01G264900.3 | Wheat | golgi | 73.19 | 72.67 |
| CDY42770 | Canola | golgi, plasma membrane, vacuole | 65.23 | 72.25 |
| HORVU6Hr1G067170.3 | Barley | endoplasmic reticulum, vacuole | 53.54 | 70.4 |
| HORVU6Hr1G067200.1 | Barley | plastid | 73.03 | 67.75 |
| Solyc02g087870.2.1 | Tomato | plasma membrane | 50.91 | 51.24 |
| Solyc09g008240.2.1 | Tomato | peroxisome | 49.32 | 47.18 |
| Solyc05g013890.1.1 | Tomato | cytosol, plasma membrane | 33.97 | 44.76 |
| Solyc02g071350.2.1 | Tomato | plastid | 44.87 | 44.66 |
| Solyc03g005860.2.1 | Tomato | plasma membrane | 43.99 | 43.92 |
| Solyc02g071340.1.1 | Tomato | plasma membrane | 43.6 | 43.39 |
| Solyc06g009280.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 43.68 | 42.59 |
| Solyc11g067300.1.1 | Tomato | plasma membrane | 41.61 | 41.51 |
| Solyc03g093650.2.1 | Tomato | plasma membrane | 40.33 | 41.32 |
| Solyc07g064120.1.1 | Tomato | plasma membrane | 41.37 | 41.3 |
| Solyc06g072960.1.1 | Tomato | peroxisome | 33.17 | 40.56 |
| Solyc12g098840.1.1 | Tomato | peroxisome | 40.97 | 40.23 |
| Solyc07g018130.1.1 | Tomato | plasma membrane | 40.41 | 39.84 |
| Solyc06g009290.2.1 | Tomato | nucleus | 44.31 | 39.79 |
| GSMUA_Achr4P17010_001 | Banana | peroxisome | 34.53 | 39.28 |
| Solyc04g010310.2.1 | Tomato | plasma membrane | 38.82 | 37.98 |
Protein Annotations
| Gene3D:1.20.1560.10 | MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
| InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 |
| InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 | UniProt:K4CN33 | InterPro:P-loop_NTPase | PFAM:PF00005 |
| PFAM:PF00664 | ScanProsite:PS00211 | PFscan:PS50893 | PFscan:PS50929 | PANTHER:PTHR24221 | PANTHER:PTHR24221:SF415 |
| SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 | EnsemblPlantsGene:Solyc08g076720.2 | EnsemblPlants:Solyc08g076720.2.1 | TMHMM:TMhelix |
| UniParc:UPI000276C0A7 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr8:-:60661103..60670786
Molecular Weight (calculated)
138164.0 Da
IEP (calculated)
8.845
GRAVY (calculated)
0.140
Length
1257 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSQQQSHALS VDSSKISKMN QKNNEEEEER KKKTHKKVSL LKLFSFADSY DYLLMFLGSI GACLHGASVP VFFIFFGKMI NIAGLAYLFP AQTSHKIAKY
0101: SLDFVYLSVV ILFASWIEVA CWMHSGERQA AKIRMAYLKS MLNQDISLFD TEASTGEVIA AITSDIIIVQ DAISEKAGNF LHYISRFLAG FTIGFIRVWQ
0201: ISLVTLSIVP LIALAGGIYA YVTIGLIARV RKSYIKAGEI AEEVVANIRT VQAFTGEENA VKSYKGALLN TYKYGRKAGF AKGLGLGTLH CILFLSWSLL
0301: VWFTSIVVHK NIANGGDSFT TMLNVVIAGL SLGQAAPDIT AFLRAKSAAY PIFEMIERDT ISKTSSKSGQ KLSKVDGHIQ FKDVCFSYPS RPDVVIFDKL
0401: SLDIPSGKIV ALVGGSGSGK STVISLIERF YEPLSGQILL DGFDIRHLDL KWLRQQIGLV NQEPALFATT IRENILYGKS DASLEDIARA AKLSEAMTFI
0501: NNLPDRFETQ VGERGVQLSG GQKQRIAISR AIVKNPSILL LDEATSALDA ESEKSVQDAL DRVMVGRTTV IVAHRLSTIR NADIIAVVNN GKIVETGSHE
0601: ELISKPNSAY ASLVQLQQAA SSHLHPSQEP TMGRPHSIRY SRELSRTTTR SRGASFRSEK SVSGIGAGDV EDVKSPNVSA GRLYSMIRPE WHYGVIGTIC
0701: AFIAGAQMPL FALGVSQALV SYYMDWDTTR HEVKKICFLF CVGAVLTVVV HAIAHTCFGI IGERLTLRVR EMMFSAMLRN EIGWFDEVNN SSSTLASRLE
0801: SDATLLRTVV VDRSTILLQN VGLVATSFII AFILNWRLTL VVMAMYPLIV SGHISEKLFM SGFGGDLSKA YLRANMFAGE AVSNIRTVAA FCAEEKVTDL
0901: YARELVEPAK HSFRRGQTAG ILYGVSQFFI FSSYALALWY GSVLMGKELT SFKAVMKSFM VLIVTALAMG ETLAMAPDLI KGNQMVASVF EVLDRKTEIV
1001: TDSGEELTVV EGTIEFKDVE FCYPARPDVH IFRDFNMRVH AGKSMAIVGQ SGSGKSSVLA LILRFYDPIS GKVIIDGKDI RKLKLNSLRK HIGLVQQEPA
1101: LFATTIYENI LYGKEGASEA EVIQAAKLAN AHSFISALPD GYSTQVGERG VQLSGGQKQR VAIARAVLKN PEILLLDEAT SALDVESERI VQQALDRLMR
1201: NRTTVIVAHR LSTIKDADQI SVLQDGKIVD QGTHSALIEN RDGAYFKLIH LQQQQQQ
0101: SLDFVYLSVV ILFASWIEVA CWMHSGERQA AKIRMAYLKS MLNQDISLFD TEASTGEVIA AITSDIIIVQ DAISEKAGNF LHYISRFLAG FTIGFIRVWQ
0201: ISLVTLSIVP LIALAGGIYA YVTIGLIARV RKSYIKAGEI AEEVVANIRT VQAFTGEENA VKSYKGALLN TYKYGRKAGF AKGLGLGTLH CILFLSWSLL
0301: VWFTSIVVHK NIANGGDSFT TMLNVVIAGL SLGQAAPDIT AFLRAKSAAY PIFEMIERDT ISKTSSKSGQ KLSKVDGHIQ FKDVCFSYPS RPDVVIFDKL
0401: SLDIPSGKIV ALVGGSGSGK STVISLIERF YEPLSGQILL DGFDIRHLDL KWLRQQIGLV NQEPALFATT IRENILYGKS DASLEDIARA AKLSEAMTFI
0501: NNLPDRFETQ VGERGVQLSG GQKQRIAISR AIVKNPSILL LDEATSALDA ESEKSVQDAL DRVMVGRTTV IVAHRLSTIR NADIIAVVNN GKIVETGSHE
0601: ELISKPNSAY ASLVQLQQAA SSHLHPSQEP TMGRPHSIRY SRELSRTTTR SRGASFRSEK SVSGIGAGDV EDVKSPNVSA GRLYSMIRPE WHYGVIGTIC
0701: AFIAGAQMPL FALGVSQALV SYYMDWDTTR HEVKKICFLF CVGAVLTVVV HAIAHTCFGI IGERLTLRVR EMMFSAMLRN EIGWFDEVNN SSSTLASRLE
0801: SDATLLRTVV VDRSTILLQN VGLVATSFII AFILNWRLTL VVMAMYPLIV SGHISEKLFM SGFGGDLSKA YLRANMFAGE AVSNIRTVAA FCAEEKVTDL
0901: YARELVEPAK HSFRRGQTAG ILYGVSQFFI FSSYALALWY GSVLMGKELT SFKAVMKSFM VLIVTALAMG ETLAMAPDLI KGNQMVASVF EVLDRKTEIV
1001: TDSGEELTVV EGTIEFKDVE FCYPARPDVH IFRDFNMRVH AGKSMAIVGQ SGSGKSSVLA LILRFYDPIS GKVIIDGKDI RKLKLNSLRK HIGLVQQEPA
1101: LFATTIYENI LYGKEGASEA EVIQAAKLAN AHSFISALPD GYSTQVGERG VQLSGGQKQR VAIARAVLKN PEILLLDEAT SALDVESERI VQQALDRLMR
1201: NRTTVIVAHR LSTIKDADQI SVLQDGKIVD QGTHSALIEN RDGAYFKLIH LQQQQQQ
0001: MYISLIFFLS NHFPPLISIP IFIFLSFSSP TNYTHLKLKK MQPSGDPAPE KEKEMTQPKV SLLKLFSFAD FYDCVLMTLG SVGACIHGAS VPIFFIFFGK
0101: LINIIGLAYL FPKQASHRVA KYSLDFVYLS VAILFSSWLE VACWMHTGER QAAKMRRAYL RSMLSQDISL FDTEASTGEV ISAITSDILV VQDALSEKVG
0201: NFLHYISRFI AGFAIGFTSV WQISLVTLSI VPLIALAGGI YAFVAIGLIA RVRKSYIKAG EIAEEVIGNV RTVQAFTGEE RAVRLYREAL ENTYKYGRKA
0301: GLTKGLGLGS MHCVLFLSWA LLVWFTSVVV HKDIADGGKS FTTMLNVVIA GLSLGQAAPD ISAFVRAKAA AYPIFKMIER NTVTKTSAKS GRKLGKVDGH
0401: IQFKDATFSY PSRPDVVIFD RLNLAIPAGK IVALVGGSGS GKSTVISLIE RFYEPISGAV LLDGNNISEL DIKWLRGQIG LVNQEPALFA TTIRENILYG
0501: KDDATAEEIT RAAKLSEAIS FINNLPEGFE TQVGERGIQL SGGQKQRIAI SRAIVKNPSI LLLDEATSAL DAESEKSVQE ALDRVMVGRT TVVVAHRLST
0601: VRNADIIAVV HEGKIVEFGN HENLISNPDG AYSSLLRLQE TASLQRNPSL NRTLSRPHSI KYSRELSRTR SSFCSERESV TRPDGADPSK KVKVTVGRLY
0701: SMIRPDWMYG VCGTICAFIA GSQMPLFALG VSQALVSYYS GWDETQKEIK KIAILFCCAS VITLIVYTIE HICFGTMGER LTLRVRENMF RAILKNEIGW
0801: FDEVDNTSSM LASRLESDAT LLKTIVVDRS TILLQNLGLV VTSFIIAFIL NWRLTLVVLA TYPLVISGHI SEKLFMQGYG GDLNKAYLKA NMLAGESVSN
0901: IRTVAAFCAE EKILELYSRE LLEPSKSSFR RGQIAGLFYG VSQFFIFSSY GLALWYGSTL MDKGLAGFKS VMKTFMVLIV TALAMGETLA LAPDLLKGNQ
1001: MVASVFEILD RKTQIVGETS EELNNVEGTI ELKGVHFSYP SRPDVVIFRD FDLIVRAGKS MALVGQSGSG KSSVISLILR FYDPTAGKVM IEGKDIKKLD
1101: LKALRKHIGL VQQEPALFAT TIYENILYGN EGASQSEVVE SAMLANAHSF ITSLPEGYST KVGERGVQMS GGQRQRIAIA RAILKNPAIL LLDEATSALD
1201: VESERVVQQA LDRLMANRTT VVVAHRLSTI KNADTISVLH GGKIVEQGSH RKLVLNKSGP YFKLISLQQQ QQP
0101: LINIIGLAYL FPKQASHRVA KYSLDFVYLS VAILFSSWLE VACWMHTGER QAAKMRRAYL RSMLSQDISL FDTEASTGEV ISAITSDILV VQDALSEKVG
0201: NFLHYISRFI AGFAIGFTSV WQISLVTLSI VPLIALAGGI YAFVAIGLIA RVRKSYIKAG EIAEEVIGNV RTVQAFTGEE RAVRLYREAL ENTYKYGRKA
0301: GLTKGLGLGS MHCVLFLSWA LLVWFTSVVV HKDIADGGKS FTTMLNVVIA GLSLGQAAPD ISAFVRAKAA AYPIFKMIER NTVTKTSAKS GRKLGKVDGH
0401: IQFKDATFSY PSRPDVVIFD RLNLAIPAGK IVALVGGSGS GKSTVISLIE RFYEPISGAV LLDGNNISEL DIKWLRGQIG LVNQEPALFA TTIRENILYG
0501: KDDATAEEIT RAAKLSEAIS FINNLPEGFE TQVGERGIQL SGGQKQRIAI SRAIVKNPSI LLLDEATSAL DAESEKSVQE ALDRVMVGRT TVVVAHRLST
0601: VRNADIIAVV HEGKIVEFGN HENLISNPDG AYSSLLRLQE TASLQRNPSL NRTLSRPHSI KYSRELSRTR SSFCSERESV TRPDGADPSK KVKVTVGRLY
0701: SMIRPDWMYG VCGTICAFIA GSQMPLFALG VSQALVSYYS GWDETQKEIK KIAILFCCAS VITLIVYTIE HICFGTMGER LTLRVRENMF RAILKNEIGW
0801: FDEVDNTSSM LASRLESDAT LLKTIVVDRS TILLQNLGLV VTSFIIAFIL NWRLTLVVLA TYPLVISGHI SEKLFMQGYG GDLNKAYLKA NMLAGESVSN
0901: IRTVAAFCAE EKILELYSRE LLEPSKSSFR RGQIAGLFYG VSQFFIFSSY GLALWYGSTL MDKGLAGFKS VMKTFMVLIV TALAMGETLA LAPDLLKGNQ
1001: MVASVFEILD RKTQIVGETS EELNNVEGTI ELKGVHFSYP SRPDVVIFRD FDLIVRAGKS MALVGQSGSG KSSVISLILR FYDPTAGKVM IEGKDIKKLD
1101: LKALRKHIGL VQQEPALFAT TIYENILYGN EGASQSEVVE SAMLANAHSF ITSLPEGYST KVGERGVQMS GGQRQRIAIA RAILKNPAIL LLDEATSALD
1201: VESERVVQQA LDRLMANRTT VVVAHRLSTI KNADTISVLH GGKIVEQGSH RKLVLNKSGP YFKLISLQQQ QQP
Arabidopsis Description
ABCB2ABC transporter B family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPK2]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.