Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 7
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0019g00310.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 89.03 | 88.0 |
| HORVU3Hr1G117250.1 | Barley | mitochondrion | 7.39 | 85.59 |
| KRG92957 | Soybean | nucleus | 87.55 | 80.41 |
| KRH36206 | Soybean | cytosol, golgi, plastid | 87.32 | 80.2 |
| KRH70512 | Soybean | extracellular | 87.08 | 79.81 |
| KRH01590 | Soybean | mitochondrion | 87.0 | 79.74 |
| GSMUA_Achr3P17720_001 | Banana | peroxisome | 77.04 | 79.07 |
| CDX76106 | Canola | cytosol, golgi, peroxisome | 84.75 | 77.79 |
| Bra014756.1-P | Field mustard | cytosol, golgi, peroxisome | 84.67 | 77.71 |
| CDY24958 | Canola | mitochondrion, plasma membrane, plastid | 84.28 | 77.63 |
| CDY20443 | Canola | cytosol, mitochondrion, plasma membrane | 84.59 | 77.59 |
| AT2G39480.1 | Thale cress | cytosol, mitochondrion, plasma membrane | 84.82 | 77.47 |
| CDY65312 | Canola | cytosol | 84.28 | 77.41 |
| AT3G55320.1 | Thale cress | cytosol, peroxisome, plasma membrane | 84.75 | 77.34 |
| Bra005036.1-P | Field mustard | mitochondrion | 84.67 | 77.27 |
| CDY07647 | Canola | cytosol | 84.2 | 77.23 |
| CDY53591 | Canola | cytosol, mitochondrion, plasma membrane | 84.59 | 77.2 |
| Bra000136.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 84.12 | 77.05 |
| KXG34231 | Sorghum | cytosol, plasma membrane, vacuole | 81.79 | 75.02 |
| TraesCS3A01G536300.1 | Wheat | cytosol, plasma membrane, vacuole | 81.79 | 75.02 |
| TraesCS3D01G541700.1 | Wheat | cytosol, plasma membrane, vacuole | 81.79 | 74.7 |
| Os03t0280000-01 | Rice | plasma membrane | 81.56 | 74.27 |
| TraesCS3B01G607600.1 | Wheat | cytosol, plasma membrane, vacuole | 81.48 | 74.26 |
| TraesCS4B01G203000.1 | Wheat | cytosol, plasma membrane, plastid | 81.32 | 74.17 |
| TraesCS4A01G101600.3 | Wheat | cytosol, plasma membrane, plastid | 81.32 | 74.17 |
| TraesCS4D01G203900.2 | Wheat | cytosol, plasma membrane, plastid | 81.17 | 74.02 |
| Zm00001d028671_P002 | Maize | cytosol, plasma membrane, vacuole | 80.54 | 73.98 |
| EER92449 | Sorghum | plasma membrane | 81.17 | 73.81 |
| Zm00001d047780_P002 | Maize | plasma membrane | 80.7 | 73.39 |
| Zm00001d041947_P001 | Maize | cytosol, peroxisome, plasma membrane | 80.23 | 73.38 |
| Solyc02g087870.2.1 | Tomato | plasma membrane | 39.3 | 40.43 |
| Solyc08g076720.2.1 | Tomato | unclear | 37.98 | 38.82 |
| Solyc09g008240.2.1 | Tomato | peroxisome | 39.07 | 38.2 |
| Solyc06g072960.1.1 | Tomato | peroxisome | 30.51 | 38.13 |
| Solyc05g013890.1.1 | Tomato | cytosol, plasma membrane | 28.17 | 37.95 |
| Solyc06g009280.1.1 | Tomato | cytosol, peroxisome, plasma membrane | 36.73 | 36.62 |
| Solyc03g005860.2.1 | Tomato | plasma membrane | 35.41 | 36.14 |
| Solyc02g071350.2.1 | Tomato | plastid | 35.1 | 35.71 |
| Solyc02g071340.1.1 | Tomato | plasma membrane | 35.02 | 35.63 |
| Solyc11g067300.1.1 | Tomato | plasma membrane | 34.4 | 35.08 |
| Solyc12g098840.1.1 | Tomato | peroxisome | 34.79 | 34.92 |
| Solyc03g093650.2.1 | Tomato | plasma membrane | 33.07 | 34.64 |
| Solyc07g064120.1.1 | Tomato | plasma membrane | 33.7 | 34.39 |
| Solyc07g018130.1.1 | Tomato | plasma membrane | 33.62 | 33.88 |
| Solyc06g009290.2.1 | Tomato | nucleus | 36.81 | 33.79 |
Protein Annotations
| Gene3D:1.20.1560.10 | MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
| InterPro:ABC_transporter-like | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | InterPro:IPR003439 |
| InterPro:IPR011527 | InterPro:IPR036640 | UniProt:K4BPI5 | InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 |
| PFscan:PS50893 | PFscan:PS50929 | PANTHER:PTHR24222 | PANTHER:PTHR24222:SF21 | SMART:SM00382 | SUPFAM:SSF52540 |
| SUPFAM:SSF90123 | EnsemblPlantsGene:Solyc04g010310.2 | EnsemblPlants:Solyc04g010310.2.1 | TMHMM:TMhelix | UniParc:UPI0002765E1C | SEG:seg |
Description
ABC transporter B family member 20 [Source:Projected from Arabidopsis thaliana (AT3G55320) UniProtKB/Swiss-Prot;Acc:Q9M3B9]
Coordinates
chr4:+:3631081..3639205
Molecular Weight (calculated)
142343.0 Da
IEP (calculated)
6.781
GRAVY (calculated)
0.056
Length
1285 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRNEDGERVL ALTILYIAGG VFVAGWIEVS CWILTGERQT AVIRSRYVQV LLNQDMSFFD TYGNNGDIVS QVLSDVLLIQ SALSEKVGNY IHNMATFFSG
0101: LVIGFVNCWQ IALITLATGP FIVAAGGISN IFLHRLAENI QDAYAEAASI AEQAVSYIRT LYAFTNETLA KYSYATSLQA TLRYGILISL VQGLGLGFTY
0201: GLAICSCALQ LWVGRFLVTH GKAHGGEVVT ALFAVILSGL GLNQAATNFY SFEQGRIAAY RLFEMISRSS SVANNEGTTL PSVQGNIEFR NVYFSYLSRP
0301: EIPILSGFYL TVPAKKAVAL VGRNGSGKSS IIPLMERFYD PTLGEVLLDG ENIKNLKLEW LRSRIGLVTQ EPALLSLSIR DNIAYGRDAS SDQIEEAAKI
0401: AHAHTFISSL EGGYETQVGR TGLTLTEEQK IKLSVARAVL SSPSILLLDE VTGGLDFEAE RSVQGALDLL MLGRSTIIIA RRLSLIRNAD YIAVMEEGQL
0501: VEMGTHDELI ALDGLYAELL KCEEAAKLPR RMPMRNHKGT AVFQVEKDSS ASHSFQEPSS PKMMKSPSLQ RVSGAHAFWA ADVTFSSQES PHNRSPPPEQ
0601: MVENGMPLDS SDKEPSIRRQ DSFEMRLPEL PKIDVQSANR KLSNNSDPES PVSPLLTSDP KNERSHSQTF SRPNSEFDDF PNTSEETKDT ENREPPSFWR
0701: LVELSLAEWL YALLGSTGAA IFGSLNPLLA YVIALIVTAY YTTDDKHHLQ RDVDRWCLII ACMGVVTVFA NFLQHFYFGI MGEKMTERVR RMMFSAMLRN
0801: EVGWFDEEEN SADNLSMRLA NDATFVRAAF SNRLSIFIQD TSAVIVAILI GMLLQWRLAL VALATLPVLT VSAVAQKLWL AGLSKGIQEM HRKASLVLED
0901: AVRNIYTVVA FCAGDKVMEL YRSQLQKIFT KSFLHGVAIG FAFGFSQFLL FGCNALLLWY TALMVKNKHV NLTTALKEFM VFSFASFALV EPFGLAPYIL
1001: KRRKSLTSVF EIIDRAPKID PDDNSALKPP NVYGSIELKN IDFSYPSRPE VLVLSNFTLK VNGGQTVAVV GVSGSGKSTI ISLIERFYDP VAGQVLLDGR
1101: DLKSYNLRWL RNHLGLVQQE PIIFSTTIRE NIIYARHNAS EAEMKEAARI ANAHHFISSL PHGYDTHVGM RGVDLTPGQK QRIAIARVVL KNAPILLLDE
1201: ASSSIESESS RVIQEALDTL IMGNKTTILI AHRAAMMRHV DNIVVLNGGR IVEEGTHDTL MSKNGLYVRL MQPHFGKGLR QHRLV
0101: LVIGFVNCWQ IALITLATGP FIVAAGGISN IFLHRLAENI QDAYAEAASI AEQAVSYIRT LYAFTNETLA KYSYATSLQA TLRYGILISL VQGLGLGFTY
0201: GLAICSCALQ LWVGRFLVTH GKAHGGEVVT ALFAVILSGL GLNQAATNFY SFEQGRIAAY RLFEMISRSS SVANNEGTTL PSVQGNIEFR NVYFSYLSRP
0301: EIPILSGFYL TVPAKKAVAL VGRNGSGKSS IIPLMERFYD PTLGEVLLDG ENIKNLKLEW LRSRIGLVTQ EPALLSLSIR DNIAYGRDAS SDQIEEAAKI
0401: AHAHTFISSL EGGYETQVGR TGLTLTEEQK IKLSVARAVL SSPSILLLDE VTGGLDFEAE RSVQGALDLL MLGRSTIIIA RRLSLIRNAD YIAVMEEGQL
0501: VEMGTHDELI ALDGLYAELL KCEEAAKLPR RMPMRNHKGT AVFQVEKDSS ASHSFQEPSS PKMMKSPSLQ RVSGAHAFWA ADVTFSSQES PHNRSPPPEQ
0601: MVENGMPLDS SDKEPSIRRQ DSFEMRLPEL PKIDVQSANR KLSNNSDPES PVSPLLTSDP KNERSHSQTF SRPNSEFDDF PNTSEETKDT ENREPPSFWR
0701: LVELSLAEWL YALLGSTGAA IFGSLNPLLA YVIALIVTAY YTTDDKHHLQ RDVDRWCLII ACMGVVTVFA NFLQHFYFGI MGEKMTERVR RMMFSAMLRN
0801: EVGWFDEEEN SADNLSMRLA NDATFVRAAF SNRLSIFIQD TSAVIVAILI GMLLQWRLAL VALATLPVLT VSAVAQKLWL AGLSKGIQEM HRKASLVLED
0901: AVRNIYTVVA FCAGDKVMEL YRSQLQKIFT KSFLHGVAIG FAFGFSQFLL FGCNALLLWY TALMVKNKHV NLTTALKEFM VFSFASFALV EPFGLAPYIL
1001: KRRKSLTSVF EIIDRAPKID PDDNSALKPP NVYGSIELKN IDFSYPSRPE VLVLSNFTLK VNGGQTVAVV GVSGSGKSTI ISLIERFYDP VAGQVLLDGR
1101: DLKSYNLRWL RNHLGLVQQE PIIFSTTIRE NIIYARHNAS EAEMKEAARI ANAHHFISSL PHGYDTHVGM RGVDLTPGQK QRIAIARVVL KNAPILLLDE
1201: ASSSIESESS RVIQEALDTL IMGNKTTILI AHRAAMMRHV DNIVVLNGGR IVEEGTHDTL MSKNGLYVRL MQPHFGKGLR QHRLV
0001: MMISRGLFGW SPPHIQPLTP VSEVSEPPES PSPYLDPGAE HGGTGTAAQA DDEEEMEEPE EMEPPPAAVP FSQLFACADR FDWVLMVFGS VAAAAHGTAL
0101: IVYLHYFAKI VQVLAFPTDS DHLISDDQFN RLLELSLTIV YIAGGVFISG WIEVSCWILT GERQTAVIRS KYVQVLLNQD MSFFDTYGNN GDIVSQVLSD
0201: VLLIQSALSE KVGNYIHNMA TFISGLIIGF VNCWEIALIT LATGPFIVAA GGISNIFLHR LAENIQDAYA EAASIAEQAV SYVRTLYAFT NETLAKYSYA
0301: TSLQATLRYG ILISLVQGLG LGFTYGLAIC SCAMQLWIGR FFVIHHRANG GEIITALFAV ILSGLGLNQA ATNFYSFDQG RIAAYRLFEM ISRSSSGTNQ
0401: EGIILSAVQG NIEFRNVYFS YLSRPEIPIL SGFYLTVPAK KAVALVGRNG SGKSSIIPLM ERFYDPTLGE VLLDGENIKN LKLEWLRSQI GLVTQEPALL
0501: SLSIRENIAY GRDATLDQIE EAAKKAHAHT FISSLEKGYE TQVGKTGLTL TEEQKIKLSI ARAVLLDPTI LLLDEVTGGL DFEAERVVQE ALDLLMLGRS
0601: TIIIARRLSL IRNADYIAVM EEGQLLEMGT HDELINLGNL YAELLKCEEA TKLPRRMPVR NYNDSAAFQA ERDSSAGRGF QEPSSPKMAK SPSLQRGHNV
0701: FRSQELCFNS EESPNDHSPA PEKLGENGSS LDVGEKEPTI KRQDSFEMRL PELPKIDIQC PQRQKSNGSD PESPISPLLI SDPQNERSHS QTFSRPLGHS
0801: DDTSASVKVA KDGQHKEPPS FWRLAQLSFP EWLYAVLGSI GAAIFGSFNP LLAYVIALVV TTYYTSKGSH LREEVDKWCL IIACMGIVTV VANFLQHFYF
0901: GIMGEKMTER VRRMMFSAML RNEVGWYDEE ENSPDTLSMR LANDATFVRA AFSNRLSIFI QDSFAVIVAI LIGLLLGWRL ALVALATLPV LTLSAIAQKL
1001: WLAGFSKGIQ EMHRKASLVL EDAVRNIYTV VAFCAGNKVM ELYRLQLQRI LRQSFFHGMA IGFAFGFSQF LLFACNALLL WYTALSVDRR YMKLSTALTE
1101: YMVFSFATFA LVEPFGLAPY ILKRRRSLAS VFEIIDRVPT IEPDDTSALS PPNVYGSIEL KNIDFCYPTR PEVLVLSNFS LKVNGGQTVA VVGVSGSGKS
1201: TIISLIERYY DPVAGQVLLD GRDLKSYNLR WLRSHMGLIQ QEPIIFSTTI RENIIYARHN ASEAEMKEAA RIANAHHFIS SLPHGYDTHI GMRGVELTQG
1301: QKQRIAIARV VLKNAPILLI DEASSSIESE SSRVVQEALD TLIMGNKTTI LIAHRVAMMR HVDNIVVLNG GKIVEEGTHD CLAGKNGLYV RLMQPHFGKN
1401: LRRHQLI
0101: IVYLHYFAKI VQVLAFPTDS DHLISDDQFN RLLELSLTIV YIAGGVFISG WIEVSCWILT GERQTAVIRS KYVQVLLNQD MSFFDTYGNN GDIVSQVLSD
0201: VLLIQSALSE KVGNYIHNMA TFISGLIIGF VNCWEIALIT LATGPFIVAA GGISNIFLHR LAENIQDAYA EAASIAEQAV SYVRTLYAFT NETLAKYSYA
0301: TSLQATLRYG ILISLVQGLG LGFTYGLAIC SCAMQLWIGR FFVIHHRANG GEIITALFAV ILSGLGLNQA ATNFYSFDQG RIAAYRLFEM ISRSSSGTNQ
0401: EGIILSAVQG NIEFRNVYFS YLSRPEIPIL SGFYLTVPAK KAVALVGRNG SGKSSIIPLM ERFYDPTLGE VLLDGENIKN LKLEWLRSQI GLVTQEPALL
0501: SLSIRENIAY GRDATLDQIE EAAKKAHAHT FISSLEKGYE TQVGKTGLTL TEEQKIKLSI ARAVLLDPTI LLLDEVTGGL DFEAERVVQE ALDLLMLGRS
0601: TIIIARRLSL IRNADYIAVM EEGQLLEMGT HDELINLGNL YAELLKCEEA TKLPRRMPVR NYNDSAAFQA ERDSSAGRGF QEPSSPKMAK SPSLQRGHNV
0701: FRSQELCFNS EESPNDHSPA PEKLGENGSS LDVGEKEPTI KRQDSFEMRL PELPKIDIQC PQRQKSNGSD PESPISPLLI SDPQNERSHS QTFSRPLGHS
0801: DDTSASVKVA KDGQHKEPPS FWRLAQLSFP EWLYAVLGSI GAAIFGSFNP LLAYVIALVV TTYYTSKGSH LREEVDKWCL IIACMGIVTV VANFLQHFYF
0901: GIMGEKMTER VRRMMFSAML RNEVGWYDEE ENSPDTLSMR LANDATFVRA AFSNRLSIFI QDSFAVIVAI LIGLLLGWRL ALVALATLPV LTLSAIAQKL
1001: WLAGFSKGIQ EMHRKASLVL EDAVRNIYTV VAFCAGNKVM ELYRLQLQRI LRQSFFHGMA IGFAFGFSQF LLFACNALLL WYTALSVDRR YMKLSTALTE
1101: YMVFSFATFA LVEPFGLAPY ILKRRRSLAS VFEIIDRVPT IEPDDTSALS PPNVYGSIEL KNIDFCYPTR PEVLVLSNFS LKVNGGQTVA VVGVSGSGKS
1201: TIISLIERYY DPVAGQVLLD GRDLKSYNLR WLRSHMGLIQ QEPIIFSTTI RENIIYARHN ASEAEMKEAA RIANAHHFIS SLPHGYDTHI GMRGVELTQG
1301: QKQRIAIARV VLKNAPILLI DEASSSIESE SSRVVQEALD TLIMGNKTTI LIAHRVAMMR HVDNIVVLNG GKIVEEGTHD CLAGKNGLYV RLMQPHFGKN
1401: LRRHQLI
Arabidopsis Description
ABCB6ABC transporter B family member 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPT1]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
SUBAcon: [mitochondrion,plasma membrane,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.