Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G203900.2 | Wheat | cytosol, plasma membrane, plastid | 99.57 | 99.57 |
| HORVU4Hr1G058580.2 | Barley | cytosol, plasma membrane, plastid | 99.43 | 99.43 |
| TraesCS4B01G203000.1 | Wheat | cytosol, plasma membrane, plastid | 99.36 | 99.36 |
| Os03t0280000-01 | Rice | plasma membrane | 94.25 | 94.12 |
| EER92449 | Sorghum | plasma membrane | 93.97 | 93.7 |
| Zm00001d047780_P002 | Maize | plasma membrane | 93.9 | 93.63 |
| Zm00001d028671_P002 | Maize | cytosol, plasma membrane, vacuole | 92.83 | 93.5 |
| GSMUA_Achr3P17720_001 | Banana | peroxisome | 75.66 | 85.14 |
| Solyc04g010310.2.1 | Tomato | plasma membrane | 74.17 | 81.32 |
| TraesCS3A01G536300.1 | Wheat | cytosol, plasma membrane, vacuole | 80.48 | 80.94 |
| VIT_13s0019g00310.t01 | Wine grape | endoplasmic reticulum, golgi, plasma membrane | 73.95 | 80.15 |
| KRG92957 | Soybean | nucleus | 78.85 | 79.41 |
| KRH36206 | Soybean | cytosol, golgi, plastid | 78.71 | 79.27 |
| KRH01590 | Soybean | mitochondrion | 78.07 | 78.46 |
| KRH70512 | Soybean | extracellular | 78.0 | 78.39 |
| CDY20443 | Canola | cytosol, mitochondrion, plasma membrane | 77.08 | 77.52 |
| CDY24958 | Canola | mitochondrion, plasma membrane, plastid | 76.58 | 77.35 |
| CDY07647 | Canola | cytosol | 76.51 | 76.94 |
| CDY53591 | Canola | cytosol, mitochondrion, plasma membrane | 76.86 | 76.92 |
| AT2G39480.1 | Thale cress | cytosol, mitochondrion, plasma membrane | 76.79 | 76.9 |
| Bra005036.1-P | Field mustard | mitochondrion | 76.79 | 76.85 |
| AT3G55320.1 | Thale cress | cytosol, peroxisome, plasma membrane | 76.72 | 76.78 |
| VIT_06s0004g04100.t01 | Wine grape | cytosol | 76.51 | 76.73 |
| Bra000136.1-P | Field mustard | cytosol, mitochondrion, peroxisome | 76.37 | 76.69 |
| CDY65312 | Canola | cytosol | 75.87 | 76.41 |
| CDX76106 | Canola | cytosol, golgi, peroxisome | 75.73 | 76.21 |
| Bra014756.1-P | Field mustard | cytosol, golgi, peroxisome | 75.66 | 76.14 |
| TraesCS2A01G521400.2 | Wheat | cytosol, peroxisome, plasma membrane | 37.76 | 42.02 |
| TraesCS2A01G344300.1 | Wheat | cytosol, peroxisome, plasma membrane | 37.62 | 41.96 |
| TraesCS7A01G284900.1 | Wheat | plasma membrane | 36.55 | 41.33 |
| TraesCS6A01G264900.3 | Wheat | golgi | 36.62 | 40.76 |
| TraesCS3A01G117600.3 | Wheat | peroxisome, plasma membrane | 32.22 | 39.07 |
| TraesCS1A01G081300.1 | Wheat | unclear | 35.2 | 38.87 |
| TraesCS4A01G370600.1 | Wheat | plasma membrane | 33.71 | 38.56 |
| TraesCS3A01G258200.1 | Wheat | peroxisome | 33.85 | 38.16 |
| TraesCS3A01G257500.1 | Wheat | plasma membrane | 34.0 | 38.11 |
| TraesCS1A01G368500.1 | Wheat | cytosol, peroxisome, plasma membrane | 34.07 | 37.94 |
| TraesCS2A01G009900.1 | Wheat | plasma membrane | 33.85 | 37.92 |
| TraesCS2A01G009600.1 | Wheat | plasma membrane | 33.29 | 37.43 |
| TraesCS7A01G303200.1 | Wheat | cytosol | 20.51 | 36.96 |
| TraesCS3A01G258400.3 | Wheat | peroxisome | 32.79 | 36.73 |
| TraesCS5A01G495900.1 | Wheat | plasma membrane | 32.79 | 36.46 |
| TraesCS3A01G369700.1 | Wheat | peroxisome | 32.93 | 36.25 |
| TraesCS3A01G258000.1 | Wheat | mitochondrion | 33.92 | 36.05 |
| TraesCS2A01G323900.1 | Wheat | plasma membrane | 31.16 | 34.68 |
| TraesCS7A01G303100.1 | Wheat | peroxisome | 30.16 | 33.62 |
| TraesCS4A01G006900.1 | Wheat | peroxisome | 30.73 | 28.96 |
Protein Annotations
| Gene3D:1.20.1560.10 | MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom | InterPro:ABC1_TM_sf |
| InterPro:ABC_transporter-like | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 | GO:GO:0055085 | InterPro:IPR003439 |
| InterPro:IPR011527 | InterPro:IPR036640 | InterPro:P-loop_NTPase | PFAM:PF00005 | PFAM:PF00664 | PFscan:PS50893 |
| PFscan:PS50929 | PANTHER:PTHR24222 | PANTHER:PTHR24222:SF27 | SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS4A01G101600 | EnsemblPlants:TraesCS4A01G101600.3 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:-:113855477..113863713
Molecular Weight (calculated)
155393.0 Da
IEP (calculated)
6.495
GRAVY (calculated)
0.025
Length
1409 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVPSGLFGWA SPHVQPLTPV SEVSEPPESP SPYGDGPSGD AGVGVREGEG ADDEDVEEDE VEPPPAAVSF WRLFEFADGL DWALMAAGAL AAAAHGAALV
0101: VYLHYFGRSL NLLDSERIQS ALHGRSDELL NQFKQHALYI IYIAAGVFVA GWIEVSCWIL TGERQTAVIR SKYVQVLLNQ DMSFFDTYGN NGDIVSQVLS
0201: DVLLIQSAIS EKVGNYIHNM ATFVGGLIVG LLNCWQIALL TLATGPLIVA AGGISNIFLH RLAENIQDAY AEAASIAEQA TSYIRTLYAF TNETLAKYSY
0301: ATSLQATLRY GILISLVQGI GLGFTYGLAI CSCALQLWVG RHLISRGKAD GGQVVVALFA VILSGLGLNQ AATNFYSFEQ GRIAAYRLYE MISRSTSSTN
0401: LEGTTIPQVQ GNIEFRNVYF SYLSRPEIPI LSGFFLSVPA RKTVALVGRN GSGKSSIIPL MERFYDPTLG EVLLDGENIK NLKVEWLRSQ IGLVTQEPAL
0501: LSLSIRENIA YGRFATFDQI EEAAKTAHAH GFISSLEKGY ETQVGRAGLA LTDEQKIKIS IARAVLSSPS ILLLDEVTGG LDFEAEKAVQ GALDVLMLGR
0601: STIIIARRLS LIKHADYIAV MEEGHLVEMG THDELLNLDG LYAELLRCEE ATKLPKRMPT KNSRERKSLQ FEDPPISQNF QESSSPKMAK SPSLQRTHGM
0701: LQFWRSDTTR NSHDSPKDRS PPPEQTTDNG IPLVATERAP SIKRHDSFEM ELPNLPKVDI HPIQRQSSKN AGPDSPISPL LTSDPKNERS HSQTFSRPQS
0801: ERDDTSSEQS EPDELQHHKP PSFWRLAALS IAEWPYALLG TIGAAIFGSF NPLLAYTIAL TVSAYYQIEV SDMHHEVNRW CLFIVGMGVI TVLVNWLQHF
0901: YFGIMGEKMT ERIRRMMFSA MLRNEAGWFD KEENSADTLS MRLANDATFV RAAFSNRLSI FIQDTAAVSV ALLIGMLLGW RVALVALATL PVLVISAIAQ
1001: KLWLAGFSKG IQEMHRKASL VLEDAVRNIY TVVAFCAGDK IMELYKLHLG KILKQSLVHG LAIGFGFGFS QFLLFACNAL LLWYIATSVD KQRLTIATGL
1101: KQYILFSFAS FALVEPFGLA PYILKRRKSL TSVFEIIDRE PKIDPDDNTG LKPPNVYGSI EFKNVDFSYP VRPEIFVLSN FNLKVSGGQT VAVVGVSGSG
1201: KSTIISLIER FYDPMSGQVL LDGRDLKSFN LRWLRSHMGL IQQEPVIFST TIRENIIYAR HNATEAEMKE AARIANAHHF ISSLPHGYDT HVGMRGVDLT
1301: PGQKQRIAIA RVVLKNAPIL LLDEASSAIE SESSRVVQEA LDTLVMGNKT TVLIAHRAAM MKHVDNIVVL NGGRIVEQGT HDSLMDLNGL YVRLMQPHFG
1401: KGLRQHRLG
0101: VYLHYFGRSL NLLDSERIQS ALHGRSDELL NQFKQHALYI IYIAAGVFVA GWIEVSCWIL TGERQTAVIR SKYVQVLLNQ DMSFFDTYGN NGDIVSQVLS
0201: DVLLIQSAIS EKVGNYIHNM ATFVGGLIVG LLNCWQIALL TLATGPLIVA AGGISNIFLH RLAENIQDAY AEAASIAEQA TSYIRTLYAF TNETLAKYSY
0301: ATSLQATLRY GILISLVQGI GLGFTYGLAI CSCALQLWVG RHLISRGKAD GGQVVVALFA VILSGLGLNQ AATNFYSFEQ GRIAAYRLYE MISRSTSSTN
0401: LEGTTIPQVQ GNIEFRNVYF SYLSRPEIPI LSGFFLSVPA RKTVALVGRN GSGKSSIIPL MERFYDPTLG EVLLDGENIK NLKVEWLRSQ IGLVTQEPAL
0501: LSLSIRENIA YGRFATFDQI EEAAKTAHAH GFISSLEKGY ETQVGRAGLA LTDEQKIKIS IARAVLSSPS ILLLDEVTGG LDFEAEKAVQ GALDVLMLGR
0601: STIIIARRLS LIKHADYIAV MEEGHLVEMG THDELLNLDG LYAELLRCEE ATKLPKRMPT KNSRERKSLQ FEDPPISQNF QESSSPKMAK SPSLQRTHGM
0701: LQFWRSDTTR NSHDSPKDRS PPPEQTTDNG IPLVATERAP SIKRHDSFEM ELPNLPKVDI HPIQRQSSKN AGPDSPISPL LTSDPKNERS HSQTFSRPQS
0801: ERDDTSSEQS EPDELQHHKP PSFWRLAALS IAEWPYALLG TIGAAIFGSF NPLLAYTIAL TVSAYYQIEV SDMHHEVNRW CLFIVGMGVI TVLVNWLQHF
0901: YFGIMGEKMT ERIRRMMFSA MLRNEAGWFD KEENSADTLS MRLANDATFV RAAFSNRLSI FIQDTAAVSV ALLIGMLLGW RVALVALATL PVLVISAIAQ
1001: KLWLAGFSKG IQEMHRKASL VLEDAVRNIY TVVAFCAGDK IMELYKLHLG KILKQSLVHG LAIGFGFGFS QFLLFACNAL LLWYIATSVD KQRLTIATGL
1101: KQYILFSFAS FALVEPFGLA PYILKRRKSL TSVFEIIDRE PKIDPDDNTG LKPPNVYGSI EFKNVDFSYP VRPEIFVLSN FNLKVSGGQT VAVVGVSGSG
1201: KSTIISLIER FYDPMSGQVL LDGRDLKSFN LRWLRSHMGL IQQEPVIFST TIRENIIYAR HNATEAEMKE AARIANAHHF ISSLPHGYDT HVGMRGVDLT
1301: PGQKQRIAIA RVVLKNAPIL LLDEASSAIE SESSRVVQEA LDTLVMGNKT TVLIAHRAAM MKHVDNIVVL NGGRIVEQGT HDSLMDLNGL YVRLMQPHFG
1401: KGLRQHRLG
0001: MMISRGLFGW SPPHMQPLTP VSEVSEPPES PSPYLDPGAE SGGGTGTAAA LAEADEEMDD QDELEPPPAA VPFSQLFACA DRFDWVLMIV GSVAAAAHGT
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI
Arabidopsis Description
ABCB20ABC transporter B family member 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M3B9]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.