Factsheet for Zm00001d047780_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
plasma membrane 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, vacuole
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	vacuole

plasma membrane: 23353019
mitochondrion: 27297264

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92449	Sorghum	plasma membrane	97.45	97.45
Zm00001d028671_P002	Maize	cytosol, plasma membrane, vacuole	95.75	96.71
Os03t0280000-01	Rice	plasma membrane	94.06	94.19
TraesCS4A01G101600.3	Wheat	cytosol, plasma membrane, plastid	93.63	93.9
TraesCS4B01G203000.1	Wheat	cytosol, plasma membrane, plastid	93.42	93.68
HORVU4Hr1G058580.2	Barley	cytosol, plasma membrane, plastid	93.35	93.61
TraesCS4D01G203900.2	Wheat	cytosol, plasma membrane, plastid	93.35	93.61
GSMUA_Achr3P17720_001	Banana	peroxisome	75.16	84.82
Solyc04g010310.2.1	Tomato	plasma membrane	73.39	80.7
VIT_13s0019g00310.t01	Wine grape	endoplasmic reticulum, golgi, plasma membrane	74.1	80.54
Zm00001d041947_P001	Maize	cytosol, peroxisome, plasma membrane	79.83	80.28
KRG92957	Soybean	nucleus	78.7	79.49
KRH36206	Soybean	cytosol, golgi, plastid	78.49	79.27
KRH70512	Soybean	extracellular	78.06	78.67
KRH01590	Soybean	mitochondrion	77.99	78.6
CDY24958	Canola	mitochondrion, plasma membrane, plastid	76.72	77.71
CDY20443	Canola	cytosol, mitochondrion, plasma membrane	76.86	77.52
AT3G55320.1	Thale cress	cytosol, peroxisome, plasma membrane	77.07	77.34
CDY07647	Canola	cytosol	76.5	77.16
CDY53591	Canola	cytosol, mitochondrion, plasma membrane	76.79	77.06
Bra000136.1-P	Field mustard	cytosol, mitochondrion, peroxisome	76.5	77.05
Bra005036.1-P	Field mustard	mitochondrion	76.72	76.99
AT2G39480.1	Thale cress	cytosol, mitochondrion, plasma membrane	76.57	76.9
CDY65312	Canola	cytosol	76.01	76.77
CDX76106	Canola	cytosol, golgi, peroxisome	76.01	76.71
VIT_06s0004g04100.t01	Wine grape	cytosol	76.22	76.65
Bra014756.1-P	Field mustard	cytosol, golgi, peroxisome	75.94	76.64
Zm00001d026426_P005	Maize	cytosol	38.29	42.5
Zm00001d002119_P006	Maize	cytosol	37.79	42.18
Zm00001d025590_P002	Maize	cytosol, nucleus, plasma membrane	37.72	41.87
Zm00001d051514_P002	Maize	mitochondrion	36.94	41.36
Zm00001d053706_P002	Maize	mitochondrion, plasma membrane	34.82	39.58
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	34.68	38.34
Zm00001d016794_P001	Maize	plasma membrane	33.97	38.22
Zm00001d009448_P001	Maize	cytosol, peroxisome, plasma membrane	34.18	38.21
Zm00001d031871_P001	Maize	cytosol	38.08	37.99
Zm00001d009447_P002	Maize	plasma membrane	33.97	37.97
Zm00001d043762_P001	Maize	cytosol	34.04	37.78
Zm00001d011644_P002	Maize	plasma membrane	34.11	37.51
Zm00001d005528_P001	Maize	plasma membrane	31.35	36.82
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	34.61	36.63
Zm00001d024600_P002	Maize	peroxisome	32.55	36.42
Zm00001d043766_P005	Maize	cytosol	32.63	36.07
Zm00001d044564_P008	Maize	cytosol, peroxisome, plasma membrane	33.19	35.45
Zm00001d049565_P001	Maize	peroxisome	30.36	33.94
Zm00001d004442_P001	Maize	plastid	30.86	28.74

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:100382746	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom
InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	ProteinID:AQL07589.1	ProteinID:AQL07598.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016887
GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	UniProt:K7VMZ7
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24222
PANTHER:PTHR24222:SF27	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI000220D3FA
EnsemblPlantsGene:Zm00001d047780	EnsemblPlants:Zm00001d047780_P002	EnsemblPlants:Zm00001d047780_T002	SEG:seg	:	:

Description

ABC transporter B family member 6

Coordinates

chr9:+:141567592..141575710

Molecular Weight (calculated)

155824.0 Da

IEP (calculated)

6.328

GRAVY (calculated)

0.044

Length

1413 amino acids

Sequence
(BLAST)

0001: MVPGGLFGWA SPHVQPLTPV SEVSEPPESP SPYGDGPAGD AGVGAREGEG AGAGEEEVED DEVEPPPAAV SFWRLFEFAD GVDWALMAAG ALAAAAHGAA
0101: LVVYLHYFGR ALNLLDSERV GSSLYGRSDE LLSRFKEHAL YIVFIAAGVF VAGWIEVSCW ILTGERQTAV IRSKYVHVLL NQDMSFFDTY GNNGDIVSQV
0201: LSDVLLIQSA ISEKVGNYIH NMATFVGGLI VGLLNCWQIA LLTLATGPLI VAAGGISNIF LHRLAENIQD AYSEAASIGE QAISYIRTLY AFTNETLAKY
0301: SYATSLQATL RYGILISLVQ GIGLGFTYGL AICSCALQLW VGRHLIHRGK ADGGEVVVAL FSVILSGLGL NQAATNFYSF DQGRIAAYRL YEMISRSTSS
0401: TNQEGTTLPQ VQGNIEFRNV YFSYLSRPEI PILSGFFLTV PARKTVALVG RNGSGKSSII PLMERFYDPT LGEVLLDGEN IKNLKVEWLR SQIGLVTQEP
0501: ALLSLSIREN IAYGRSATFD QIEEAAKTAH AHGFISSLEK GYETQVGRAG LALTDEQKIK ISIARAVLSN PSILLLDEVT GGLDFEAEKA VQEALDVLML
0601: GRSTIIIARR LCLIKNADYI AVMEEGHLVE MGTHDELLNL DGLYAELLRC EEATKLPKRM PTKNSREHKS LQSEDALVSQ YFQESSSPKM AKSPSLQRTH
0701: GMLQFWRSDA NRNSHDSPKD LSPPSEQTMD NGIPMVAIET ERTPSIKRQN SFEMKLPDLP KVDVHPIQRQ SSKNSEPDSP ISPLLTSDPK NERSHSQTFS
0801: RPQSEQDDTS SERSELDEVQ HQKPPSFWRL ATLSIAEWPY ALLGTIGAAI FGSFNPLLAY TIALIVSAYY QIEIRDMRHE VNRWCLFIVG MGVITVLVNW
0901: LQHFYFGIMG EKMTERIRRM MFSAMLRNEV GWFDKDENNA DTLSMRLAND ATFVRAAFSN RLSIFIQDTA AVSVALLIGM LLGWRVALVA LATLPVLVIS
1001: AIAQKLWLAG FSKGIQEMHR KASLVLEDAV RNIYTVVAFC AGDKIMELYR LHLGKILKQS LVQGLAIGFG FGLSQFLLFA CNALLLWYTA ISVDRQRLTI
1101: ATGLKEYILF SFASFALVEP FGLAPYILKR RKSLTSVFEI IDREPKIDPD DTTGLKPPNV YGSIEFKSVD FSYPVRPDIL VLSNFNLKVS GGQTLAVVGV
1201: SGSGKSTIIS LIERFYDPVS GQVLLDGRDL KSFNLRWLRS HMGLIQQDPV IFSTTIRENI IYARHIATEA EIKEAARIAN AHHFISSLPH GYDTHVGMRG
1301: VDLTPGQKQR IAIARVVLKN APILLLDEAS SAIESESSRV VQEALDTLVM GNKTTILIAH RAAMMKHVDN IVVLNGGRIV EQGTHDSLMD QNGLYVRLMQ
1401: PHFGKGLRQH RLV

Best Arabidopsis Sequence Match ( AT3G55320.1 )
(BLAST)

0001: MMISRGLFGW SPPHMQPLTP VSEVSEPPES PSPYLDPGAE SGGGTGTAAA LAEADEEMDD QDELEPPPAA VPFSQLFACA DRFDWVLMIV GSVAAAAHGT
0101: ALIVYLHYFA KIVDVLAFSN DSSQQRSEHQ FDRLVQLSLT IVYIAGGVFI SGWIEVSCWI LTGERQTAVI RSKYVQVLLN QDMSFFDTYG NNGDIVSQVL
0201: SDVLLIQSAL SEKVGNYIHN MATFISGLVI GFVNCWEIAL ITLATGPFIV AAGGISNIFL HRLAENIQDA YAEAAGIAEQ AISYIRTLYA FTNETLAKYS
0301: YATSLQATLR YGILISLVQG LGLGFTYGLA ICSCALQLWI GRFFVHNGRA NGGEIIAALF AVILSGLGLN QAATNFYSFD QGRIAAYRLF EMITRSSSVA
0401: NQEGAVLASV QGNIEFRNVY FSYLSRPEIP ILSGFYLTVP AKKAVALVGR NGSGKSSIIP LMERFYDPTL GEVLLDGENI KNLKLEWLRS QIGLVTQEPA
0501: LLSLSIRENI AYGRDATLDQ IEEAAKNAHA HTFISSLEKG YETQVGRAGL AMTEEQKIKL SIARAVLLNP TILLLDEVTG GLDFEAERIV QEALDLLMLG
0601: RSTIIIARRL SLIKNADYIA VMEEGQLVEM GTHDELINLG GLYAELLKCE EATKLPRRMP VRNYKESAVF EVERDSSAGC GVQEPSSPKM IKSPSLQRGS
0701: GVFRPQELCF DTEESPKAHS PASEKTGEDG MSLDCADKEP TIKRQDSFEM RLPHLPKVDV QCPQQKSNGS EPESPVSPLL TSDPKNERSH SQTFSRPLSS
0801: PDDTKANGKA SKDAQHKESP SFWRLAQLSF PEWLYAVLGS LGAAIFGSFN PLLAYVIALV VTEYYKSKGG HLREEVDKWC LIIACMGIVT VVANFLQHFY
0901: FGIMGEKMTE RVRRMMFSAM LRNEVGWFDD EENSPDTLSM RLANDATFVR AAFSNRLSIF IQDSFAVIVA LLIGLLLGWR LALVALATLP ILTLSAIAQK
1001: LWLAGFSKGI QEMHRKASLV LEDAVRNIYT VVAFCAGNKV MELYRMQLQR ILRQSYLHGM AIGFAFGFSQ FLLFACNALL LWCTALSVNR GYMKLSTAIT
1101: EYMVFSFATF ALVEPFGLAP YILKRRKSLI SVFEIVDRVP TIEPDDNSAL KPPNVYGSIE LKNVDFCYPT RPEILVLSNF SLKISGGQTV AVVGVSGSGK
1201: STIISLVERY YDPVAGQVLL DGRDLKLYNL RWLRSHMGLV QQEPIIFSTT IRENIIYARH NASEAEMKEA ARIANAHHFI SSLPHGYDTH IGMRGVELTP
1301: GQKQRIAIAR VVLKNAPIIL IDEASSSIES ESSRVVQEAL DTLIMGNKTT ILIAHRAAMM RHVDNIVVLN GGRIVEEGTH DSLAAKNGLY VRLMQPHFGK
1401: GLRQHRLI

Arabidopsis Description

ABCB20ABC transporter B family member 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M3B9]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.