Factsheet for Zm00001d031871_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004930_P001
Zm00001d046893_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36910.1	Zm00001d004930_P001	AT3G21640.1	14517332
AT2G36910.1	Zm00001d046893_P001	AT5G57090.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G284900.1	Wheat	plasma membrane	77.75	88.36
TraesCS7B01G181700.1	Wheat	cytosol	83.05	85.96
TraesCS7D01G284100.1	Wheat	cytosol	83.4	85.89
Os08t0564300-04	Rice	plasma membrane	79.59	83.85
HORVU7Hr1G063020.3	Barley	cytosol	82.91	83.2
OQU80682	Sorghum	plasma membrane	85.24	78.33
GSMUA_Achr4P12130_001	Banana	cytosol	73.45	77.21
AT2G36910.1	Thale cress	peroxisome	69.07	76.05
GSMUA_Achr4P04430_001	Banana	cytosol, peroxisome, plasma membrane	71.96	75.2
Solyc09g008240.2.1	Tomato	peroxisome	69.63	75.04
KRH32507	Soybean	cytosol, nucleus, plasma membrane	71.05	74.91
KRG96023	Soybean	cytosol, peroxisome, plasma membrane	70.41	74.46
VIT_08s0007g05060.t01	Wine grape	cytosol, peroxisome, plasma membrane	71.19	74.45
KRH67730	Soybean	cytosol, peroxisome, plasma membrane	70.34	74.22
Bra017216.1-P	Field mustard	cytosol, nucleus, plasma membrane	70.13	74.22
PGSC0003DMT400009924	Potato	peroxisome	69.84	74.19
KRH19897	Soybean	cytosol, peroxisome, plasma membrane	70.06	73.97
CDY46744	Canola	cytosol, peroxisome, plasma membrane	69.49	73.54
Bra023087.1-P	Field mustard	cytosol, nucleus, plasma membrane	69.49	73.49
CDX79704	Canola	plasma membrane	69.28	73.15
Zm00001d025590_P002	Maize	cytosol, nucleus, plasma membrane	46.75	52.0
Zm00001d002119_P006	Maize	cytosol	45.69	51.11
Zm00001d026426_P005	Maize	cytosol	45.9	51.06
Zm00001d051514_P002	Maize	mitochondrion	43.79	49.13
Zm00001d053706_P002	Maize	mitochondrion, plasma membrane	38.98	44.41
Zm00001d005528_P001	Maize	plasma membrane	36.44	42.89
Zm00001d016794_P001	Maize	plasma membrane	37.78	42.6
Zm00001d008178_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	38.42	42.57
Zm00001d009447_P002	Maize	plasma membrane	36.86	41.3
Zm00001d043762_P001	Maize	cytosol	37.08	41.24
Zm00001d040562_P002	Maize	cytosol, peroxisome, plasma membrane	38.63	40.97
Zm00001d009448_P001	Maize	cytosol, peroxisome, plasma membrane	36.44	40.82
Zm00001d044564_P008	Maize	cytosol, peroxisome, plasma membrane	37.99	40.67
Zm00001d011644_P002	Maize	plasma membrane	36.86	40.62
Zm00001d024600_P002	Maize	peroxisome	35.59	39.91
Zm00001d043766_P005	Maize	cytosol	35.03	38.81
Zm00001d028671_P002	Maize	cytosol, plasma membrane, vacuole	37.92	38.38
Zm00001d047780_P002	Maize	plasma membrane	37.99	38.08
Zm00001d049565_P001	Maize	peroxisome	33.69	37.74
Zm00001d041947_P001	Maize	cytosol, peroxisome, plasma membrane	37.43	37.72
Zm00001d004442_P001	Maize	plastid	36.79	34.34

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:100384057	MapMan:24.1.3.1.1	Gene3D:3.40.50.300	UniProt:A0A1D6KLY8	InterPro:AAA+_ATPase
InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf	InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008361	GO:GO:0009506	GO:GO:0009605	GO:GO:0009606	GO:GO:0009607
GO:GO:0009624	GO:GO:0009628	GO:GO:0009637	GO:GO:0009639	GO:GO:0009640	GO:GO:0009719
GO:GO:0009733	GO:GO:0009791	GO:GO:0009908	GO:GO:0009926	GO:GO:0009958	GO:GO:0009987
GO:GO:0010315	GO:GO:0010328	GO:GO:0010329	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016787	GO:GO:0016887	GO:GO:0042626	GO:GO:0043481	GO:GO:0048443	GO:GO:0055085
GO:GO:0060919	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640	ProteinID:ONM03865.1	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929	PANTHER:PTHR24221
PANTHER:PTHR24221:SF119	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix	UniParc:UPI0008457FA9
EnsemblPlantsGene:Zm00001d031871	EnsemblPlants:Zm00001d031871_P001	EnsemblPlants:Zm00001d031871_T001	SEG:seg	:	:

Description

brachytic2 brachytic2

Coordinates

chr1:-:204748411..204755635

Molecular Weight (calculated)

152199.0 Da

IEP (calculated)

8.820

GRAVY (calculated)

0.057

Length

1416 amino acids

Sequence
(BLAST)

0001: MSSSDPEEIR ARVVVLGSPH ADGGDEWARP ELEAFHLPSP AHQPPGFLAG QPEAAEQPTL PAPAGRSSSS SNTPTTSAGG GAAPPPPSSP PPPPASLETE
0101: QPPNARPASA GANDSKKPTP PAALRDLFRF ADGLDCALML IGTLGALVHG CSLPVFLRFF ADLVDSFGSH ADDPDTMVRL VVKYAFYFLV VGAAIWASSW
0201: AACVRRELAV NLDWMTNHVG QPIAVATNEM FKSFAPLAEI SCWMWTGERQ STRMRIRYLD AALRQDVSFF DTDVRASDVI YAINADAVVV QDAISEKLGN
0301: LIHYMATFVA GFVVGFTAAW QLALVTLAVV PLIAVIGGLS AAALAKLSSR SQDALSGASG IAEQALAQIR IVQAFVGEER EMRAYSAALA VAQRIGYRSG
0401: FAKGLGLGGT YFTVFCCYGL LLWYGGHLVR AQHTNGGLAI ATMFSVMIGG LALGQSAPSM AAFAKARVAA AKIFRIIDHR PGISSRDGAE PESVTGRVEM
0501: RGVDFAYPSR PDVPILRGFS LSVPAGKTIA LVGSSGSGKS TVVSLIERFY DPSAGQILLD GHDLRSLELR WLRRQIGLVS QEPALFATSI RENLLLGRDS
0601: QSATLAEMEE AARVANAHSF IIKLPDGYDT QVGERGLQLS GGQKQRIAIA RAMLKNPAIL LLDEATSALD SESEKLVQEA LDRFMIGRTT LVIAHRLSTI
0701: RKADVVAVLQ GGAVSEMGAH DELMAKGENG TYAKLIRMQE QAHEAALVNA RRSSARPSSA RNSVSSPIMT RNSSYGRSPY SRRLSDFSTS DFTLSIHDPH
0801: HHHRTMADKQ LAFRAGASSF LRLARMNSPE WAYALAGSIG SMVCGSFSAI FAYILSAVLS VYYAPDPRYM KREIAKYCYL LIGMSSAALL FNTVQHVFWD
0901: TVGENLTKRV REKMFAAVLR NEIAWFDADE NASARVAARL ALDAQNVRSA IGDRISVIVQ NSALMLVACT AGFVLQWRLA LVLLAVFPLV VGATVLQKMF
1001: MKGFSGDLEA AHARATQIAG EAVANLRTVA AFNAERKITG LFEANLRGPL RRCFWKGQIA GSGYGVAQFL LYASYALGLW YAAWLVKHGV SDFSRTIRVF
1101: MVLMVSANGA AETLTLAPDF IKGGRAMRSV FETIDRKTEV EPDDVDAAPV PERPRGEVEL KHVDFSYPSR PDIQVFRDLS LRARAGKTLA LVGPSGCGKS
1201: SVLALVQRFY EPTSGRVLLD GKDVRKYNLR ALRRVVAVVP QEPFLFAASI HENIAYGREG ATEAEVVEAA AQANAHRFIA ALPEGYRTQV GERGVQLSGG
1301: QRQRIAIARA LVKQAAIVLL DEATSALDAE SERCVQEALE RAGSGRTTIV VAHRLATVRG AHTIAVIDDG KVAEQGSHSH LLKHHPDGCY ARMLQLQRLT
1401: GAAAGPGPST SCNGAA

Best Arabidopsis Sequence Match ( AT2G36910.1 )
(BLAST)

0001: MDNDGGAPPP PPTLVVEEPK KAEIRGVAFK ELFRFADGLD YVLMGIGSVG AFVHGCSLPL FLRFFADLVN SFGSNSNNVE KMMEEVLKYA LYFLVVGAAI
0101: WASSWAEISC WMWSGERQTT KMRIKYLEAA LNQDIQFFDT EVRTSDVVFA INTDAVMVQD AISEKLGNFI HYMATFVSGF IVGFTAVWQL ALVTLAVVPL
0201: IAVIGGIHTT TLSKLSNKSQ ESLSQAGNIV EQTVVQIRVV MAFVGESRAS QAYSSALKIA QKLGYKTGLA KGMGLGATYF VVFCCYALLL WYGGYLVRHH
0301: LTNGGLAIAT MFAVMIGGLA LGQSAPSMAA FAKAKVAAAK IFRIIDHKPT IERNSESGVE LDSVTGLVEL KNVDFSYPSR PDVKILNNFC LSVPAGKTIA
0401: LVGSSGSGKS TVVSLIERFY DPNSGQVLLD GQDLKTLKLR WLRQQIGLVS QEPALFATSI KENILLGRPD ADQVEIEEAA RVANAHSFII KLPDGFDTQV
0501: GERGLQLSGG QKQRIAIARA MLKNPAILLL DEATSALDSE SEKLVQEALD RFMIGRTTLI IAHRLSTIRK ADLVAVLQQG SVSEIGTHDE LFSKGENGVY
0601: AKLIKMQEAA HETAMSNARK SSARPSSARN SVSSPIMTRN SSYGRSPYSR RLSDFSTSDF SLSIDASSYP NYRNEKLAFK DQANSFWRLA KMNSPEWKYA
0701: LLGSVGSVIC GSLSAFFAYV LSAVLSVYYN PDHEYMIKQI DKYCYLLIGL SSAALVFNTL QHSFWDIVGE NLTKRVREKM LSAVLKNEMA WFDQEENESA
0801: RIAARLALDA NNVRSAIGDR ISVIVQNTAL MLVACTAGFV LQWRLALVLV AVFPVVVAAT VLQKMFMTGF SGDLEAAHAK GTQLAGEAIA NVRTVAAFNS
0901: EAKIVRLYTA NLEPPLKRCF WKGQIAGSGY GVAQFCLYAS YALGLWYASW LVKHGISDFS KTIRVFMVLM VSANGAAETL TLAPDFIKGG QAMRSVFELL
1001: DRKTEIEPDD PDTTPVPDRL RGEVELKHID FSYPSRPDIQ IFRDLSLRAR AGKTLALVGP SGCGKSSVIS LIQRFYEPSS GRVMIDGKDI RKYNLKAIRK
1101: HIAIVPQEPC LFGTTIYENI AYGHECATEA EIIQAATLAS AHKFISALPE GYKTYVGERG VQLSGGQKQR IAIARALVRK AEIMLLDEAT SALDAESERS
1201: VQEALDQACS GRTSIVVAHR LSTIRNAHVI AVIDDGKVAE QGSHSHLLKN HPDGIYARMI QLQRFTHTQV IGMTSGSSSR VKEDDA

Arabidopsis Description

ABCB1ABC transporter B family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR72]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.