Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Zm00001d004930_P001 | |
Zm00001d046893_P001 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G28860.1 | Zm00001d004930_P001 | AT3G21640.1 | 14517332 |
AT3G28860.1 | Zm00001d046893_P001 | AT5G57090.1 | 17237354 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EES12287 | Sorghum | cytosol, peroxisome, plasma membrane | 97.64 | 98.49 |
Os04t0459000-01 | Rice | plasma membrane | 93.95 | 95.0 |
TraesCS2B01G341800.2 | Wheat | cytosol, peroxisome, plasma membrane | 92.54 | 93.2 |
TraesCS2D01G322600.1 | Wheat | cytosol, peroxisome, plasma membrane | 92.46 | 93.19 |
TraesCS2A01G344300.1 | Wheat | cytosol, peroxisome, plasma membrane | 92.22 | 92.95 |
HORVU2Hr1G080200.1 | Barley | plasma membrane | 92.07 | 92.5 |
GSMUA_Achr8P24160_001 | Banana | plasma membrane | 79.03 | 89.26 |
VIT_14s0108g00430.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 84.13 | 85.68 |
KRH18485 | Soybean | endoplasmic reticulum, mitochondrion | 83.35 | 84.95 |
PGSC0003DMT400003590 | Potato | plasma membrane | 83.03 | 84.63 |
Solyc02g087870.2.1 | Tomato | plasma membrane | 82.95 | 84.55 |
KRG93519 | Soybean | cytosol, peroxisome, plasma membrane | 82.95 | 84.48 |
Zm00001d026426_P005 | Maize | cytosol | 83.35 | 83.35 |
Zm00001d002119_P006 | Maize | cytosol | 82.88 | 83.33 |
AT3G28860.1 | Thale cress | plasma membrane | 81.07 | 82.43 |
Bra025359.1-P | Field mustard | plasma membrane | 80.75 | 82.11 |
Bra039042.1-P | Field mustard | plasma membrane | 80.68 | 82.03 |
CDX86408 | Canola | plasma membrane | 79.58 | 81.89 |
CDY65012 | Canola | plasma membrane | 80.6 | 81.88 |
CDY20012 | Canola | plasma membrane | 80.52 | 81.8 |
CDY00109 | Canola | plasma membrane | 79.97 | 81.77 |
GSMUA_Achr4P09980_001 | Banana | plasma membrane | 72.03 | 80.16 |
Zm00001d051514_P002 | Maize | mitochondrion | 48.55 | 48.97 |
Zm00001d031871_P001 | Maize | cytosol | 52.0 | 46.75 |
Zm00001d053706_P002 | Maize | mitochondrion, plasma membrane | 44.54 | 45.62 |
Zm00001d016794_P001 | Maize | plasma membrane | 43.6 | 44.19 |
Zm00001d008178_P001 | Maize | cytosol, peroxisome, plasma membrane, plastid | 43.6 | 43.43 |
Zm00001d005528_P001 | Maize | plasma membrane | 40.46 | 42.81 |
Zm00001d009447_P002 | Maize | plasma membrane | 42.11 | 42.41 |
Zm00001d009448_P001 | Maize | cytosol, peroxisome, plasma membrane | 41.87 | 42.17 |
Zm00001d043762_P001 | Maize | cytosol | 42.11 | 42.11 |
Zm00001d011644_P002 | Maize | plasma membrane | 42.42 | 42.02 |
Zm00001d040562_P002 | Maize | cytosol, peroxisome, plasma membrane | 43.75 | 41.72 |
Zm00001d044564_P008 | Maize | cytosol, peroxisome, plasma membrane | 42.03 | 40.44 |
Zm00001d043766_P005 | Maize | cytosol | 39.91 | 39.75 |
Zm00001d049565_P001 | Maize | peroxisome | 38.18 | 38.45 |
Zm00001d024600_P002 | Maize | peroxisome | 38.02 | 38.32 |
Zm00001d028671_P002 | Maize | cytosol, plasma membrane, vacuole | 42.11 | 38.31 |
Zm00001d041947_P001 | Maize | cytosol, peroxisome, plasma membrane | 42.18 | 38.22 |
Zm00001d047780_P002 | Maize | plasma membrane | 41.87 | 37.72 |
Zm00001d004442_P001 | Maize | plastid | 40.46 | 33.95 |
Protein Annotations
MapMan:11.2.4.3 | MapMan:24.1.3.1.1 | Gene3D:3.40.50.300 | UniProt:A0A1D6J7Y5 | InterPro:AAA+_ATPase | InterPro:ABC1_TM_dom |
InterPro:ABC1_TM_sf | InterPro:ABC_transporter-like | InterPro:ABC_transporter_CS | ProteinID:AQK44058.1 | GO:GO:0000166 | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006810 |
GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0016887 | GO:GO:0042626 |
GO:GO:0055085 | InterPro:IPR003439 | InterPro:IPR011527 | InterPro:IPR036640 | InterPro:P-loop_NTPase | PFAM:PF00005 |
PFAM:PF00664 | ScanProsite:PS00211 | PFscan:PS50893 | PFscan:PS50929 | PANTHER:PTHR24221 | PANTHER:PTHR24221:SF382 |
SMART:SM00382 | SUPFAM:SSF52540 | SUPFAM:SSF90123 | TMHMM:TMhelix | UniParc:UPI000845591E | EnsemblPlantsGene:Zm00001d025590 |
EnsemblPlants:Zm00001d025590_P002 | EnsemblPlants:Zm00001d025590_T002 | SEG:seg | : | : | : |
Description
ABC transporter B family member 19
Coordinates
chr10:-:123321362..123327947
Molecular Weight (calculated)
137947.0 Da
IEP (calculated)
8.550
GRAVY (calculated)
0.158
Length
1273 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAEGDAGKAE AGSCSAAAAS GAGGCDAVKK RPEQSVAFHE LFGFADPLDW LLMAAGSAGA VVHGAAMPVF FLLFGELVNG FGKNQHNLRR MTDEVSKARI
0101: YSLYFVYLGL VVCASSYLEI ACWMYTGERQ VGALRRRYLE AVLRQDVGFF DTDARTGDVV FSVSTDTLLV QDAIGEKNNV CLQVGNFIHY LATFLAGLVV
0201: GFVSAWRLAL LSIAVIPGIA FAGGLYAYTL TGLTSKSRDS YANAGIIAEQ AIAQVRTVYS YVGETKALNS YSEAIQNTLK LGYKAGMAKG LGIGCTYGIA
0301: CMSWALVFWY AGVFIRNGQT DGGKAFTAIF SAIVGGLSLG QSFSNLGAFS KGKIAGYKLL EVIRQRPTIV QDTADGRCLD EVHGNIEFKE VAFSYPSRPD
0401: VMIFRDFSLF FPAGKTAAVV GGSGSGKSTV VALIERFYDP NQGQVLLDNV DIKTLQLKWL RDQIGLVNQE PALFATTILE NILYGKPDAT MAEVEAAATS
0501: ANAHSFIALL PNGYNTHVGD RGLQLSGGQK QRIAIARAML KNPKLLLLDE ATSALDAGSE SIVQEALDRL MVGRTTVVVA HRLSTIRCVD MIAVIQQGQV
0601: VETGTHDELL AKGSSGAYAA LIRFQETARN RACPSTRKSR SSRLSNSLST RSLSLRSGSL RNLSYSYSTG ADGRIEMVSN ADNDRKYPAP RGYFFKLLKL
0701: NAPEWPYTIL GAVGSVLSGF IGPTFAIVMS NMIEVFYYRN PSKMESKTRE YVFIYIGTGL YAVVAYLVQH YFFSIMGENL TTRVRRMMLA VILRNDVGWF
0801: DQEENNSNLV AARLSTDAAD VKSAIAERIS VILQNMTSLL VSFVVGFIIE WRVALLILVT FPLLVLANFA QQLSMKGFAG DTAKAHAKTS MIAGEGVSNI
0901: RTVAAFNAQD KILSLFCSEL RVPQMHSLRR SQISGALFGL SQLSLYASEA LILWFGAHLV RTHVSTFSKV IKVFVVLVIT ANSVAETVSL APEIVRGGES
1001: IRSVFSVLNS RTRIDPDDPD AEQVESVRGE IDFRHVDFAY PTRPDVMVFK DLSLRIRAGQ SQALVGASGS GKSTVIALVE RFYDPLAGKV MIDGKDIRRL
1101: NLKSLRLRIG LVQQEPVLFA TSILENIAYG RDGATEEEVV EAAKVANVHG FVSALPDGYR TPVGERGVQL SGGQKQRIAI ARAVLKDPAV LLLDEATSAL
1201: DAESECVLQE ALERIMKGRT AVLVAHRLST IRGVDSIAVV QDGRVVEQGS HGDLVSRPDG AYSRLLQLQL HHG
0101: YSLYFVYLGL VVCASSYLEI ACWMYTGERQ VGALRRRYLE AVLRQDVGFF DTDARTGDVV FSVSTDTLLV QDAIGEKNNV CLQVGNFIHY LATFLAGLVV
0201: GFVSAWRLAL LSIAVIPGIA FAGGLYAYTL TGLTSKSRDS YANAGIIAEQ AIAQVRTVYS YVGETKALNS YSEAIQNTLK LGYKAGMAKG LGIGCTYGIA
0301: CMSWALVFWY AGVFIRNGQT DGGKAFTAIF SAIVGGLSLG QSFSNLGAFS KGKIAGYKLL EVIRQRPTIV QDTADGRCLD EVHGNIEFKE VAFSYPSRPD
0401: VMIFRDFSLF FPAGKTAAVV GGSGSGKSTV VALIERFYDP NQGQVLLDNV DIKTLQLKWL RDQIGLVNQE PALFATTILE NILYGKPDAT MAEVEAAATS
0501: ANAHSFIALL PNGYNTHVGD RGLQLSGGQK QRIAIARAML KNPKLLLLDE ATSALDAGSE SIVQEALDRL MVGRTTVVVA HRLSTIRCVD MIAVIQQGQV
0601: VETGTHDELL AKGSSGAYAA LIRFQETARN RACPSTRKSR SSRLSNSLST RSLSLRSGSL RNLSYSYSTG ADGRIEMVSN ADNDRKYPAP RGYFFKLLKL
0701: NAPEWPYTIL GAVGSVLSGF IGPTFAIVMS NMIEVFYYRN PSKMESKTRE YVFIYIGTGL YAVVAYLVQH YFFSIMGENL TTRVRRMMLA VILRNDVGWF
0801: DQEENNSNLV AARLSTDAAD VKSAIAERIS VILQNMTSLL VSFVVGFIIE WRVALLILVT FPLLVLANFA QQLSMKGFAG DTAKAHAKTS MIAGEGVSNI
0901: RTVAAFNAQD KILSLFCSEL RVPQMHSLRR SQISGALFGL SQLSLYASEA LILWFGAHLV RTHVSTFSKV IKVFVVLVIT ANSVAETVSL APEIVRGGES
1001: IRSVFSVLNS RTRIDPDDPD AEQVESVRGE IDFRHVDFAY PTRPDVMVFK DLSLRIRAGQ SQALVGASGS GKSTVIALVE RFYDPLAGKV MIDGKDIRRL
1101: NLKSLRLRIG LVQQEPVLFA TSILENIAYG RDGATEEEVV EAAKVANVHG FVSALPDGYR TPVGERGVQL SGGQKQRIAI ARAVLKDPAV LLLDEATSAL
1201: DAESECVLQE ALERIMKGRT AVLVAHRLST IRGVDSIAVV QDGRVVEQGS HGDLVSRPDG AYSRLLQLQL HHG
0001: MSETNTTDAK TVPAEAEKKK EQSLPFFKLF SFADKFDYLL MFVGSLGAIV HGSSMPVFFL LFGQMVNGFG KNQMDLHQMV HEVSRYSLYF VYLGLVVCFS
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
0101: SYAEIACWMY SGERQVAALR KKYLEAVLKQ DVGFFDTDAR TGDIVFSVST DTLLVQDAIS EKVGNFIHYL STFLAGLVVG FVSAWKLALL SVAVIPGIAF
0201: AGGLYAYTLT GITSKSRESY ANAGVIAEQA IAQVRTVYSY VGESKALNAY SDAIQYTLKL GYKAGMAKGL GLGCTYGIAC MSWALVFWYA GVFIRNGQTD
0301: GGKAFTAIFS AIVGGMSLGQ SFSNLGAFSK GKAAGYKLME IINQRPTIIQ DPLDGKCLDQ VHGNIEFKDV TFSYPSRPDV MIFRNFNIFF PSGKTVAVVG
0401: GSGSGKSTVV SLIERFYDPN SGQILLDGVE IKTLQLKFLR EQIGLVNQEP ALFATTILEN ILYGKPDATM VEVEAAASAA NAHSFITLLP KGYDTQVGER
0501: GVQLSGGQKQ RIAIARAMLK DPKILLLDEA TSALDASSES IVQEALDRVM VGRTTVVVAH RLCTIRNVDS IAVIQQGQVV ETGTHEELIA KSGAYASLIR
0601: FQEMVGTRDF SNPSTRRTRS TRLSHSLSTK SLSLRSGSLR NLSYSYSTGA DGRIEMISNA ETDRKTRAPE NYFYRLLKLN SPEWPYSIMG AVGSILSGFI
0701: GPTFAIVMSN MIEVFYYTDY DSMERKTKEY VFIYIGAGLY AVGAYLIQHY FFSIMGENLT TRVRRMMLSA ILRNEVGWFD EDEHNSSLIA ARLATDAADV
0801: KSAIAERISV ILQNMTSLLT SFIVAFIVEW RVSLLILGTF PLLVLANFAQ QLSLKGFAGD TAKAHAKTSM IAGEGVSNIR TVAAFNAQSK ILSLFCHELR
0901: VPQKRSLYRS QTSGFLFGLS QLALYGSEAL ILWYGAHLVS KGVSTFSKVI KVFVVLVITA NSVAETVSLA PEIIRGGEAV GSVFSVLDRQ TRIDPDDADA
1001: DPVETIRGDI EFRHVDFAYP SRPDVMVFRD FNLRIRAGHS QALVGASGSG KSSVIAMIER FYDPLAGKVM IDGKDIRRLN LKSLRLKIGL VQQEPALFAA
1101: TIFDNIAYGK DGATESEVID AARAANAHGF ISGLPEGYKT PVGERGVQLS GGQKQRIAIA RAVLKNPTVL LLDEATSALD AESECVLQEA LERLMRGRTT
1201: VVVAHRLSTI RGVDCIGVIQ DGRIVEQGSH SELVSRPEGA YSRLLQLQTH RI
Arabidopsis Description
ABCB19ABC transporter B family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.