Factsheet for Zm00001d046893_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002119_P006
Zm00001d012286_P001
Zm00001d017995_P003
Zm00001d025590_P002
Zm00001d026426_P005
Zm00001d031068_P001
Zm00001d031871_P001
Zm00001d033234_P001
Zm00001d037257_P001
Zm00001d042761_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57090.1	Zm00001d017995_P003	AT1G59980.1	18047472
AT5G57090.1	Zm00001d037257_P001	AT1G59980.1	18047472
AT5G57090.1	Zm00001d031068_P001	AT2G34650.1	17889649
AT5G57090.1	Zm00001d033234_P001	AT2G34650.1	17889649
AT5G57090.1	Zm00001d031871_P001	AT2G36910.1	17237354
AT5G57090.1	Zm00001d002119_P006	AT3G28860.1	17237354
AT5G57090.1	Zm00001d025590_P002	AT3G28860.1	17237354
AT5G57090.1	Zm00001d026426_P005	AT3G28860.1	17237354
AT5G57090.1	Zm00001d012286_P001	AT5G06140.1	16936718
AT5G57090.1	Zm00001d042761_P001	AT5G06140.1	16936718

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88769	Sorghum	plasma membrane	97.01	98.56
Os06t0660200-01	Rice	plasma membrane	89.94	90.79
TraesCS7D01G478800.1	Wheat	golgi, plasma membrane, vacuole	88.99	89.42
TraesCS7B01G398100.1	Wheat	golgi, plasma membrane, vacuole	88.68	89.24
TraesCS7A01G492400.1	Wheat	golgi, plasma membrane, vacuole	88.68	89.24
HORVU7Hr1G110470.7	Barley	golgi, plasma membrane, vacuole	88.36	88.64
GSMUA_Achr1P15720_001	Banana	plasma membrane	62.58	77.58
CDY11886	Canola	plasma membrane	65.09	66.88
CDY38263	Canola	plasma membrane	60.69	66.78
KRH02749	Soybean	plasma membrane	66.51	66.41
KRH19119	Soybean	endoplasmic reticulum	66.51	65.89
CDY20694	Canola	plasma membrane	65.72	65.83
CDY69709	Canola	plasma membrane	62.58	65.68
PGSC0003DMT400048251	Potato	plasma membrane	64.78	65.29
Bra002763.1-P	Field mustard	plasma membrane	60.69	64.87
Solyc07g006900.1.1	Tomato	plasma membrane	64.31	64.82
AT5G57090.1	Thale cress	golgi, plasma membrane, vacuole	65.72	64.61
VIT_11s0052g00440.t01	Wine grape	plasma membrane	63.84	64.44
CDX88606	Canola	plasma membrane	65.09	64.39
Bra006834.1-P	Field mustard	plasma membrane	64.94	64.33
CDY53978	Canola	plasma membrane	59.43	63.42
Bra035648.1-P	Field mustard	plasma membrane	65.88	63.39
Zm00001d018024_P001	Maize	plasma membrane	56.45	60.34
Zm00001d044812_P001	Maize	plasma membrane	56.45	59.73
Zm00001d052269_P001	Maize	plasma membrane	55.5	59.13
Zm00001d052442_P001	Maize	plasma membrane	52.83	58.64
Zm00001d044083_P001	Maize	plasma membrane	53.77	56.07
Zm00001d045219_P001	Maize	plasma membrane	48.43	53.01
Zm00001d043660_P001	Maize	plasma membrane	28.93	50.83
Zm00001d006082_P001	Maize	extracellular, plasma membrane, vacuole	26.57	46.3
Zm00001d042345_P001	Maize	plasma membrane	26.73	44.5
Zm00001d043179_P001	Maize	plasma membrane	26.89	38.26
Zm00001d031594_P001	Maize	plasma membrane	23.43	34.1

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	UniProt:A0A1D6P5D8	ProteinID:AQL05162.1	InterPro:Auxin_eff_plant	GO:GO:0000323
GO:GO:0001666	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009719
GO:GO:0009723	GO:GO:0009733	GO:GO:0009734	GO:GO:0009749	GO:GO:0009921	GO:GO:0009925
GO:GO:0009926	GO:GO:0009958	GO:GO:0009987	GO:GO:0010315	GO:GO:0010329	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:Mem_trans	PFAM:PF03547	InterPro:PIN2	PANTHER:PTHR31752
PANTHER:PTHR31752:SF4	TIGRFAMs:TIGR00946	TMHMM:TMhelix	UniParc:UPI000842E37D	EnsemblPlantsGene:Zm00001d046893	EnsemblPlants:Zm00001d046893_P001
EnsemblPlants:Zm00001d046893_T001	SEG:seg	:	:	:	:

Description

Auxin efflux carrier component 2

Coordinates

chr9:-:109341526..109344852

Molecular Weight (calculated)

67715.4 Da

IEP (calculated)

9.779

GRAVY (calculated)

0.275

Length

636 amino acids

Sequence
(BLAST)

001: MITGRDIYDV LAAIVPLYVA MFLAYGSVRW WAIFTPDQCS GINRFVAVFA VPLLSFHFIS SCDPYAMQYR FLAADSLQKL VILAALAVWH NVLSRYRRGA
101: AASSLDWTIT LFSLSTLPNT LVMGIPLLRA MYGDFSGNLM VQIVVLQSVI WYTLMLFLFE YRGAKALISE QFPPDVGASI ASFRVDSDVV SLNGREALQA
201: DAEVGSDGRV HVVIRRSASA STTGGGHGAA RSGAGYRPYG PSSAMTPRAS NLTGVEIYSL QTSREPTPRG SSFNQSDFYA MFNGSKMASP LAQPGAARAP
301: GLDEQVANKF ASGKGGDAAA YPAPNPGMMP PPRLFTFGND VYSRKKELGG SNSNSNKELH MFVWSSSASP VSEANLRNAV NHAASTDFAA APPPSMPVDG
401: ATPKGVSGTV TPAKKPDPAA NGGDLEIEDG LKSPATGLAA KFPVSGSPYV APRKKGADAP GLEEAAHPMP PASVMTRLIL IMVWRKLIRN PNTYSSLIGL
501: VWSLVSFRFN IQMPSIIKGS ISILSDAGLG MAMFSLGLFM ALQPKLISCG KRVATFAMAV RFLTGPAVIA ATSIAIGLRG VLLHVAIVQA ALPQGIVPFV
601: FAKEYNCHPQ ILSTAVIFGM LIALPITILY YILLGI

Best Arabidopsis Sequence Match ( AT5G57090.1 )
(BLAST)

001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL

Arabidopsis Description

PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.