Factsheet for Zm00001d018024_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05538	Sorghum	golgi, plasma membrane	96.64	95.04
Os02t0743400-01	Rice	plasma membrane	93.28	93.28
TraesCS6A01G308600.1	Wheat	plasma membrane	91.6	92.69
TraesCS6D01G287800.1	Wheat	plasma membrane	91.26	92.19
Zm00001d052269_P001	Maize	plasma membrane	89.08	88.78
Zm00001d044812_P001	Maize	plasma membrane	88.4	87.52
HORVU6Hr1G076110.2	Barley	plasma membrane	85.71	84.86
GSMUA_Achr7P07300_001	Banana	golgi, plasma membrane	74.96	78.38
GSMUA_Achr9P27160_001	Banana	plasma membrane	69.24	74.77
TraesCS6B01G337300.3	Wheat	plasma membrane	67.39	67.39
Zm00001d052442_P001	Maize	plasma membrane	59.5	61.78
Zm00001d044083_P001	Maize	plasma membrane	62.35	60.82
Zm00001d045219_P001	Maize	plasma membrane	55.63	56.97
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	60.34	56.45
Zm00001d043660_P001	Maize	plasma membrane	32.44	53.31
Zm00001d006082_P001	Maize	extracellular, plasma membrane, vacuole	27.39	44.66
Zm00001d042345_P001	Maize	plasma membrane	28.24	43.98
Zm00001d043179_P001	Maize	plasma membrane	31.76	42.28
Zm00001d031594_P001	Maize	plasma membrane	25.38	34.55

Protein Annotations

EntrezGene:103627718	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	ProteinID:ABH09243.1	ProteinID:AQK74848.1	InterPro:Auxin_eff_plant
ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF19	UniProt:Q0MWY1	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI0000DBEA48	EnsemblPlantsGene:Zm00001d018024	EnsemblPlants:Zm00001d018024_P001	EnsemblPlants:Zm00001d018024_T001	SEG:seg

Description

PIN-formed protein2 PIN-formed protein2

Coordinates

chr5:-:212254262..212257744

Molecular Weight (calculated)

64512.2 Da

IEP (calculated)

9.105

GRAVY (calculated)

0.198

Length

595 amino acids

Sequence
(BLAST)

001: MITGTDFYHV MTAVVPLYVA MILAYGSVRW WRIFSPDQCS GINRFVALFA VPLLSFHFIS TNNPYTMNLR FIAADTLQKL MVLAMLTAWS HLSRRGSLEW
101: TITLFSLSTL PNTLVMGIPL LKGMYGDFSG SLMVQIVVLQ CIIWYTLMLF MFEYRGARML ITEQFPDNAG AIASIVVDPD VVSLDGRRDA IETEAEVKED
201: GRIHVTVRRS NASRSDIYSR RSMGFSSTTP RPSNLTNAEI YSLQSSRNPT PRGSSFNHND FYSMVGRSSN FGAADAFGIR TGATPRPSNY EDDASKPKYP
301: LPVVNATSGA GAAHYPAPNP AVAAAPKGAR KAATNGQAKG EDLHMFVWSS SASPVSDVFG GGAPDYNEAA AAKSPRKMDG GKDRDDYVER DEFSFGNRGA
401: MDRDAEAGDG KAAAAGGDPS TVAAPTAMPP TSVMTRLILI MVWRKLIRNP NTYSSLIGVI WSLVCFRWNF QMPAIVLQSI SILSDAGLGM AMFSLGLFMA
501: LQPRIIACGN KVATFAMAVR FLTGPAVMAA ASFAVGLRGT LLHVAIVQAA LPQGIVPFVF AKEYNVHPDI LSTAVIFGML IALPITLVYY ILLGL

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.