Factsheet for Zm00001d006082_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35972	Sorghum	extracellular, plasma membrane, vacuole	90.96	89.49
TraesCS5A01G284500.1	Wheat	extracellular, plasma membrane, vacuole	79.73	79.73
TraesCS5B01G283500.1	Wheat	extracellular, plasma membrane, vacuole	80.0	79.35
TraesCS5D01G291800.1	Wheat	extracellular, plasma membrane, vacuole	79.45	79.02
TraesCS5B01G283600.1	Wheat	plasma membrane	75.34	75.55
PGSC0003DMT400017300	Potato	plasma membrane	16.99	62.63
Zm00001d042345_P001	Maize	plasma membrane	55.62	53.14
PGSC0003DMT400046253	Potato	plasma membrane	50.68	52.11
Solyc01g068410.2.1	Tomato	extracellular, plasma membrane	50.96	51.96
HORVU5Hr1G076120.2	Barley	golgi, plasma membrane, vacuole	35.62	48.15
Zm00001d031594_P001	Maize	plasma membrane	56.44	47.14
VIT_04s0023g00450.t01	Wine grape	golgi, plasma membrane	46.58	47.09
PGSC0003DMT400017301	Potato	golgi, plasma membrane	22.74	46.89
Solyc04g056620.1.1	Tomato	plasma membrane	38.08	40.06
PGSC0003DMT400027309	Potato	extracellular, plasma membrane, vacuole	33.15	37.69
Zm00001d043660_P001	Maize	plasma membrane	35.62	35.91
Zm00001d043179_P001	Maize	plasma membrane	37.53	30.65
Zm00001d045219_P001	Maize	plasma membrane	45.48	28.57
Os09t0505400-00	Rice	mitochondrion, nucleus, peroxisome	32.33	28.5
Zm00001d044083_P001	Maize	plasma membrane	46.85	28.03
Zm00001d052442_P001	Maize	plasma membrane	43.01	27.4
Zm00001d018024_P001	Maize	plasma membrane	44.66	27.39
Zm00001d052269_P001	Maize	plasma membrane	44.66	27.3
Zm00001d044812_P001	Maize	plasma membrane	44.93	27.29
Zm00001d046893_P001	Maize	golgi, plasma membrane, vacuole	46.3	26.57

Protein Annotations

EntrezGene:100273056	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	ProteinID:AFK32345.1	InterPro:Auxin_eff_plant	UniProt:B4FSJ4
EMBL:BT040082	GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
InterPro:Mem_trans	ProteinID:ONM22747.1	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF15	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI00017B75EA	EnsemblPlantsGene:Zm00001d006082	EnsemblPlants:Zm00001d006082_P001	EnsemblPlants:Zm00001d006082_T001	SEG:seg

Description

PIN-formed protein11 PIN-formed protein11

Coordinates

chr2:-:197602488..197606112

Molecular Weight (calculated)

38428.4 Da

IEP (calculated)

9.300

GRAVY (calculated)

0.712

Length

365 amino acids

Sequence
(BLAST)

001: MIGWGDVYKV VAAMAPLYFA LGLGYGSVRW WKLFSPDQCD AVNRLVAYFA VPFFAFDFAA RIDPFALSYR VLAADALSKL AVALALAAWA TAAASASARR
101: GGGGKGKDRA LSWCITGFSL ATLNNTLVVG VPLLDAMYGK WARDLIVQIS VVQIIVYFPA LLLALEARRA GKLAVVAEEA AGDADESGGG GSGGGTTAAQ
201: SLWPLVTAVW KKVARNPNVY AGILGVSWAC VTNRWHIETP SIIEGSVLVM SKTGVGLSMF SMGLFMALQE KVIVCGAWPT VLGMALRFVA GPAATAAGAV
301: ALGLRGDVLR LAVMQAALPQ SITTFVFARE YGLHPEVLST AVIFGTLASL PVLIVYYIVL GLIRC

Best Arabidopsis Sequence Match ( AT5G16530.1 )
(BLAST)

001: MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H

Arabidopsis Description

PIN5Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178UIR3]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.