Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G284500.1 | Wheat | extracellular, plasma membrane, vacuole | 98.1 | 98.9 |
| TraesCS5D01G291800.1 | Wheat | extracellular, plasma membrane, vacuole | 98.37 | 98.64 |
| TraesCS5B01G283600.1 | Wheat | plasma membrane | 86.96 | 87.91 |
| Zm00001d006082_P001 | Maize | extracellular, plasma membrane, vacuole | 79.35 | 80.0 |
| KXG35972 | Sorghum | extracellular, plasma membrane, vacuole | 79.35 | 78.71 |
| PGSC0003DMT400017300 | Potato | plasma membrane | 18.48 | 68.69 |
| TraesCS5B01G285000.1 | Wheat | plasma membrane | 64.67 | 61.5 |
| TraesCS5B01G284900.1 | Wheat | golgi, plasma membrane, vacuole | 62.77 | 61.27 |
| TraesCS3B01G462900.1 | Wheat | plasma membrane | 58.15 | 58.15 |
| PGSC0003DMT400046253 | Potato | plasma membrane | 53.53 | 55.49 |
| Solyc01g068410.2.1 | Tomato | extracellular, plasma membrane | 52.45 | 53.91 |
| PGSC0003DMT400017301 | Potato | golgi, plasma membrane | 23.91 | 49.72 |
| VIT_04s0023g00450.t01 | Wine grape | golgi, plasma membrane | 48.1 | 49.03 |
| HORVU5Hr1G076120.2 | Barley | golgi, plasma membrane, vacuole | 35.87 | 48.89 |
| Solyc04g056620.1.1 | Tomato | plasma membrane | 38.04 | 40.35 |
| TraesCS3B01G276500.1 | Wheat | plasma membrane | 38.86 | 40.06 |
| PGSC0003DMT400027309 | Potato | extracellular, plasma membrane, vacuole | 33.42 | 38.32 |
| TraesCS7B01G359300.1 | Wheat | plasma membrane, vacuole | 39.4 | 36.34 |
| TraesCS7B01G331500.1 | Wheat | cytosol, plasma membrane, vacuole | 36.96 | 33.5 |
| TraesCS7B01G359200.1 | Wheat | plasma membrane | 35.05 | 32.82 |
| TraesCS3B01G361500.1 | Wheat | plasma membrane | 37.5 | 32.24 |
| TraesCS4B01G130100.1 | Wheat | plasma membrane | 48.91 | 31.8 |
| Os09t0505400-00 | Rice | mitochondrion, nucleus, peroxisome | 34.51 | 30.68 |
| TraesCS7B01G095500.1 | Wheat | plasma membrane | 47.28 | 29.69 |
| TraesCS1B01G445400.1 | Wheat | golgi, plasma membrane, vacuole | 45.92 | 28.31 |
| TraesCS7B01G398100.1 | Wheat | golgi, plasma membrane, vacuole | 48.1 | 28.01 |
| TraesCS3B01G260700.1 | Wheat | plasma membrane | 41.03 | 24.79 |
| TraesCS6B01G337300.3 | Wheat | plasma membrane | 32.61 | 20.17 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G283500.1 | EnsemblPlantsGene:TraesCS5B01G283500 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Auxin_eff_plant | InterPro:Mem_trans | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF15 |
| PFAM:PF03547 | SEG:seg | TIGRFAMs:TIGR00946 | TMHMM:TMhelix | MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 |
Description
No Description!
Coordinates
chr5B:-:469121396..469125057
Molecular Weight (calculated)
38849.9 Da
IEP (calculated)
8.814
GRAVY (calculated)
0.707
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGWGDVYKV VAAMAPLYFA LGLGYGSVRW WKLFTPDQCD AVNRLVAYFA VPFFAFDFAA RMDPYALNYR VLAADALSKL AVALALAAWA AASTRCCRGG
101: AKRGGGGGEL ASSWCITGFS LATLNNTLVV GVPLLDAMYG GWARDLVVQI SVVQIIVYFP LLLLAFEVRR ACGGGAGKPD AAAAVSASED DVEDGGAEGR
201: RRREPVWPLV RAVWLKVARN PNVYAGVLGV AWSCVTNRWH IVTPSIIEGS VLIMSRTGVG LAMFSMGLFM ALQEKIIVCG AGLTALGMAL RFVAGPAATA
301: AGAVALGLRG DVLRLAIIQA ALPQSITTFV FAKEYGLHAD VLSTAVIFGT LASLPVLIVY YIVLGFVG
101: AKRGGGGGEL ASSWCITGFS LATLNNTLVV GVPLLDAMYG GWARDLVVQI SVVQIIVYFP LLLLAFEVRR ACGGGAGKPD AAAAVSASED DVEDGGAEGR
201: RRREPVWPLV RAVWLKVARN PNVYAGVLGV AWSCVTNRWH IVTPSIIEGS VLIMSRTGVG LAMFSMGLFM ALQEKIIVCG AGLTALGMAL RFVAGPAATA
301: AGAVALGLRG DVLRLAIIQA ALPQSITTFV FAKEYGLHAD VLSTAVIFGT LASLPVLIVY YIVLGFVG
001: MISWLDIYHV VSATVPLYVS MTLGFLSARH LKLFSPEQCA GINKFVAKFS IPLLSFQIIS ENNPFKMSPK LILSDILQKF LVVVVLAMVL RFWHPTGGRG
101: GKLGWVITGL SISVLPNTLI LGMPILSAIY GDEAASILEQ IVVLQSLIWY TILLFLFELN AARALPSSGA SLEHTGNDQE EANIEDEPKE EEDEEEVAIV
201: RTRSVGTMKI LLKAWRKLII NPNTYATLIG IIWATLHFRL GWNLPEMIDK SIHLLSDGGL GMAMFSLGLF MASQSSIIAC GTKMAIITML LKFVLGPALM
301: IASAYCIRLK STLFKVAILQ AALPQGVVPF VFAKEYNLHP EIISTGVIFG MLIALPTTLA YYFLLDL
101: GKLGWVITGL SISVLPNTLI LGMPILSAIY GDEAASILEQ IVVLQSLIWY TILLFLFELN AARALPSSGA SLEHTGNDQE EANIEDEPKE EEDEEEVAIV
201: RTRSVGTMKI LLKAWRKLII NPNTYATLIG IIWATLHFRL GWNLPEMIDK SIHLLSDGGL GMAMFSLGLF MASQSSIIAC GTKMAIITML LKFVLGPALM
301: IASAYCIRLK STLFKVAILQ AALPQGVVPF VFAKEYNLHP EIISTGVIFG MLIALPTTLA YYFLLDL
Arabidopsis Description
PIN8Auxin efflux carrier component 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFP6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.