Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G426700.1 | Wheat | plasma membrane | 97.83 | 95.49 |
| TraesCS3D01G421600.1 | Wheat | plasma membrane | 97.01 | 94.44 |
| HORVU3Hr1G094000.3 | Barley | plasma membrane | 97.28 | 93.47 |
| Os01t0919800-01 | Rice | plasma membrane | 84.78 | 85.95 |
| KXG33996 | Sorghum | plasma membrane | 85.6 | 83.78 |
| Zm00001d042345_P001 | Maize | plasma membrane | 85.05 | 81.94 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane, vacuole | 60.33 | 69.16 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane, vacuole | 59.51 | 67.38 |
| Bra008615.1-P | Field mustard | golgi, plasma membrane, vacuole | 60.05 | 63.51 |
| CDY67254 | Canola | golgi, plasma membrane, vacuole | 60.05 | 63.51 |
| CDX69445 | Canola | golgi, plasma membrane, vacuole | 60.05 | 63.51 |
| AT5G16530.1 | Thale cress | plasma membrane | 60.05 | 62.96 |
| CDX70699 | Canola | golgi, plasma membrane, vacuole | 59.24 | 62.64 |
| VIT_04s0023g00320.t01 | Wine grape | plasma membrane | 60.33 | 62.36 |
| TraesCS5B01G283500.1 | Wheat | extracellular, plasma membrane, vacuole | 58.15 | 58.15 |
| KRH00905 | Soybean | golgi, plasma membrane, vacuole | 57.07 | 56.91 |
| TraesCS5B01G283600.1 | Wheat | plasma membrane | 55.43 | 56.04 |
| KRH40330 | Soybean | golgi, plasma membrane, vacuole | 56.79 | 55.44 |
| CDX78697 | Canola | plasma membrane | 58.97 | 55.08 |
| TraesCS5B01G284900.1 | Wheat | golgi, plasma membrane, vacuole | 51.9 | 50.66 |
| TraesCS5B01G285000.1 | Wheat | plasma membrane | 51.63 | 49.1 |
| TraesCS3B01G276500.1 | Wheat | plasma membrane | 39.95 | 41.18 |
| TraesCS7B01G359300.1 | Wheat | plasma membrane, vacuole | 35.33 | 32.58 |
| TraesCS7B01G331500.1 | Wheat | cytosol, plasma membrane, vacuole | 35.05 | 31.77 |
| TraesCS7B01G359200.1 | Wheat | plasma membrane | 32.34 | 30.28 |
| TraesCS4B01G130100.1 | Wheat | plasma membrane | 46.2 | 30.04 |
| TraesCS3B01G361500.1 | Wheat | plasma membrane | 34.78 | 29.91 |
| TraesCS7B01G095500.1 | Wheat | plasma membrane | 44.57 | 27.99 |
| TraesCS1B01G445400.1 | Wheat | golgi, plasma membrane, vacuole | 44.02 | 27.14 |
| TraesCS7B01G398100.1 | Wheat | golgi, plasma membrane, vacuole | 45.92 | 26.74 |
| TraesCS3B01G260700.1 | Wheat | plasma membrane | 39.95 | 24.14 |
| TraesCS6B01G337300.3 | Wheat | plasma membrane | 30.98 | 19.16 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G462900.1 | EnsemblPlantsGene:TraesCS3B01G462900 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:Auxin_eff_plant | InterPro:Mem_trans | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF2 |
| PFAM:PF03547 | SEG:seg | TIGRFAMs:TIGR00946 | TMHMM:TMhelix | MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 |
Description
No Description!
Coordinates
chr3B:-:705702223..705707110
Molecular Weight (calculated)
39703.2 Da
IEP (calculated)
9.456
GRAVY (calculated)
0.683
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGWGDVYKV VAATAPLYFA LFLGYGSVRW WRIFTREQCD AVNRLVAFFA LPFFTFEFTL HTDPFQVNYR AVAADVISKA VIVAVIAVWA RFLARNGNGK
101: GAAGWSITGF SLSTLTNSLV VGVPMARAMY GEWAQQLVVQ LSVFQAIVWL TLLLFVLEVR KAAIGMYVDV GKTSVVHDAA MPESPVKADV EAAPTGAEEV
201: GGKPSVWRLV KTVAHKLARN PNTYASFVGI TWACVANRLH MELPSVLENS VLIMSKSGTG MAMFSMGLFM AQQEKILACG PSYAALGLAL KFGLGPVAMA
301: IGSIAVGLRG DVLRVAIIQA ALPQSITSFI FAKEYGLHAD VLSTAVIFGM LVSLPLLVGL YIVLELIR
101: GAAGWSITGF SLSTLTNSLV VGVPMARAMY GEWAQQLVVQ LSVFQAIVWL TLLLFVLEVR KAAIGMYVDV GKTSVVHDAA MPESPVKADV EAAPTGAEEV
201: GGKPSVWRLV KTVAHKLARN PNTYASFVGI TWACVANRLH MELPSVLENS VLIMSKSGTG MAMFSMGLFM AQQEKILACG PSYAALGLAL KFGLGPVAMA
301: IGSIAVGLRG DVLRVAIIQA ALPQSITSFI FAKEYGLHAD VLSTAVIFGM LVSLPLLVGL YIVLELIR
001: MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H
Arabidopsis Description
PIN5Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178UIR3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.