Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69445 | Canola | golgi, plasma membrane, vacuole | 90.23 | 90.23 |
| AT5G16530.1 | Thale cress | plasma membrane | 90.8 | 90.03 |
| CDY67254 | Canola | golgi, plasma membrane, vacuole | 89.66 | 89.66 |
| CDX78697 | Canola | plasma membrane | 97.99 | 86.55 |
| VIT_04s0023g00320.t01 | Wine grape | plasma membrane | 72.99 | 71.35 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane, vacuole | 65.8 | 70.46 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane, vacuole | 63.79 | 69.16 |
| KRH00905 | Soybean | golgi, plasma membrane, vacuole | 67.82 | 63.96 |
| KRH40330 | Soybean | golgi, plasma membrane, vacuole | 67.24 | 62.07 |
| Os01t0919800-01 | Rice | plasma membrane | 64.66 | 61.98 |
| KXG33996 | Sorghum | plasma membrane | 64.08 | 59.31 |
| TraesCS3B01G462900.1 | Wheat | plasma membrane | 62.64 | 59.24 |
| Zm00001d042345_P001 | Maize | plasma membrane | 63.79 | 58.12 |
| TraesCS3A01G426700.1 | Wheat | plasma membrane | 62.36 | 57.56 |
| TraesCS3D01G421600.1 | Wheat | plasma membrane | 62.36 | 57.41 |
| HORVU3Hr1G094000.3 | Barley | plasma membrane | 62.36 | 56.66 |
| Os11t0122800-00 | Rice | plasma membrane | 33.91 | 39.86 |
| CDX85565 | Canola | plasma membrane | 37.07 | 35.64 |
| CDX69551 | Canola | endoplasmic reticulum, extracellular, vacuole | 22.7 | 35.27 |
| CDY63766 | Canola | golgi, plasma membrane | 29.89 | 35.02 |
| CDX82059 | Canola | golgi, plasma membrane | 49.71 | 32.89 |
| CDX96484 | Canola | plasma membrane | 49.71 | 32.34 |
| CDY63826 | Canola | plasma membrane | 49.14 | 30.37 |
| CDY66594 | Canola | plasma membrane | 39.08 | 30.29 |
| CDY40380 | Canola | plasma membrane | 48.85 | 30.25 |
| CDY47745 | Canola | golgi, plasma membrane | 49.43 | 29.97 |
| CDX96288 | Canola | golgi, plasma membrane | 50.0 | 29.85 |
| CDY68262 | Canola | plasma membrane | 50.0 | 29.79 |
| CDY25767 | Canola | plasma membrane | 48.56 | 29.49 |
| CDX88341 | Canola | plasma membrane | 47.41 | 29.1 |
| CDX87543 | Canola | plasma membrane | 47.41 | 29.1 |
| CDY12491 | Canola | plasma membrane | 47.99 | 29.09 |
| CDX91695 | Canola | plasma membrane | 47.13 | 28.72 |
| CDY38263 | Canola | plasma membrane | 47.7 | 28.72 |
| CDY41467 | Canola | plasma membrane | 47.13 | 28.08 |
| CDX68327 | Canola | plasma membrane | 39.08 | 28.04 |
| CDY23471 | Canola | golgi, plasma membrane | 39.08 | 27.59 |
| CDY53978 | Canola | plasma membrane | 47.13 | 27.52 |
| CDY11886 | Canola | plasma membrane | 48.85 | 27.46 |
| CDY20694 | Canola | plasma membrane | 48.56 | 26.61 |
| CDX88606 | Canola | plasma membrane | 48.28 | 26.13 |
| CDY09501 | Canola | plasma membrane | 42.24 | 26.06 |
| CDY69709 | Canola | plasma membrane | 43.97 | 25.25 |
| CDY72296 | Canola | golgi, plasma membrane | 26.15 | 20.09 |
| CDX85566 | Canola | cytosol | 2.87 | 3.62 |
Protein Annotations
| MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | GO:A0A078C3E6 | InterPro:Auxin_eff_plant | EnsemblPlants:CDX70699 | ProteinID:CDX70699 |
| ProteinID:CDX70699.1 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 |
| EnsemblPlantsGene:GSBRNA2T00140563001 | InterPro:Mem_trans | PFAM:PF03547 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF2 | TIGRFAMs:TIGR00946 |
| TMHMM:TMhelix | UniParc:UPI0004EDF49D | SEG:seg | : | : | : |
Description
BnaC03g07830D
Coordinates
chrLK031791:+:1593865..1595949
Molecular Weight (calculated)
38251.3 Da
IEP (calculated)
6.503
GRAVY (calculated)
0.722
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MISGGDVYKA IEAMVPLYVA LISGYGSVKW WNIFTRDQCD AINQLVYYFT LPLFTIEFTT HVDPFNMNYR FIAADVLSKI IIIAVLAFWA KYSSKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQEAV DLVVQSSVFQ AIVWLTLLLF VLELRRAGFS SNNKVDDINI EGGRKETVVV REEKSFLEVM SVVWLKLATN
201: PNCYSCILGI AWAFISNRWH FEMPGIIEGS ILIMSKAGTG TAMFNMGIFM ALQDKLIVCG TSLTAMGMVL KFIAGPAAMA IGSIAVGLYG DVLRVAIIQA
301: ALPQSITSFI FAKEYGLHAD VLSTAVIFGM LVSLPVLVAY YAALEFIH
101: SITSFSLCTL TNSLVVGVPL AKAMYGQEAV DLVVQSSVFQ AIVWLTLLLF VLELRRAGFS SNNKVDDINI EGGRKETVVV REEKSFLEVM SVVWLKLATN
201: PNCYSCILGI AWAFISNRWH FEMPGIIEGS ILIMSKAGTG TAMFNMGIFM ALQDKLIVCG TSLTAMGMVL KFIAGPAAMA IGSIAVGLYG DVLRVAIIQA
301: ALPQSITSFI FAKEYGLHAD VLSTAVIFGM LVSLPVLVAY YAALEFIH
001: MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H
Arabidopsis Description
PIN5Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178UIR3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.