Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 8
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane, vacuole | 68.26 | 75.7 |
| CDY67254 | Canola | golgi, plasma membrane, vacuole | 73.88 | 75.57 |
| Bra008615.1-P | Field mustard | golgi, plasma membrane, vacuole | 73.6 | 75.29 |
| CDX69445 | Canola | golgi, plasma membrane, vacuole | 73.6 | 75.29 |
| GSMUA_Achr11P... | Banana | golgi, plasma membrane, vacuole | 68.54 | 75.08 |
| AT5G16530.1 | Thale cress | plasma membrane | 72.75 | 73.79 |
| CDX70699 | Canola | golgi, plasma membrane, vacuole | 71.35 | 72.99 |
| KRH00905 | Soybean | golgi, plasma membrane, vacuole | 70.79 | 68.29 |
| VIT_04s0023g00330.t01 | Wine grape | extracellular, golgi | 15.73 | 66.67 |
| KRH40330 | Soybean | golgi, plasma membrane, vacuole | 70.51 | 66.58 |
| CDX78697 | Canola | plasma membrane | 71.63 | 64.72 |
| Os01t0919800-01 | Rice | plasma membrane | 64.04 | 62.81 |
| TraesCS3B01G462900.1 | Wheat | plasma membrane | 62.36 | 60.33 |
| KXG33996 | Sorghum | plasma membrane | 63.2 | 59.84 |
| Zm00001d042345_P001 | Maize | plasma membrane | 62.64 | 58.38 |
| TraesCS3A01G426700.1 | Wheat | plasma membrane | 61.8 | 58.36 |
| TraesCS3D01G421600.1 | Wheat | plasma membrane | 61.52 | 57.94 |
| HORVU3Hr1G094000.3 | Barley | plasma membrane | 62.08 | 57.7 |
| VIT_04s0023g00450.t01 | Wine grape | golgi, plasma membrane | 57.58 | 56.79 |
| Os11t0122800-00 | Rice | plasma membrane | 35.67 | 42.91 |
| VIT_14s0108g00020.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 41.57 | 41.46 |
| VIT_05s0062g01120.t01 | Wine grape | plasma membrane | 48.6 | 37.37 |
| VIT_18s0001g15420.t01 | Wine grape | plasma membrane | 47.47 | 30.73 |
| VIT_08s0040g01230.t01 | Wine grape | golgi, plasma membrane | 49.72 | 29.65 |
| VIT_08s0040g01220.t01 | Wine grape | plasma membrane | 49.44 | 29.38 |
| VIT_17s0000g02420.t01 | Wine grape | plasma membrane | 48.88 | 29.29 |
| VIT_11s0052g00440.t01 | Wine grape | plasma membrane | 49.72 | 28.1 |
| VIT_01s0011g04860.t01 | Wine grape | golgi, plasma membrane | 50.0 | 27.43 |
Protein Annotations
| EntrezGene:100244520 | wikigene:100244520 | MapMan:11.2.4.1.1 | MapMan:24.2.5.2.1 | InterPro:Auxin_eff_plant | ProteinID:CBI17652 |
| ProteinID:CBI17652.3 | UniProt:D7SPS3 | EMBL:FN594959 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009555 | GO:GO:0009719 |
| GO:GO:0009734 | GO:GO:0009926 | GO:GO:0009987 | GO:GO:0010252 | GO:GO:0010315 | GO:GO:0010329 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | GO:GO:0080161 | GO:GO:0080162 | EntrezGene:LOC100244520 |
| wikigene:LOC100244520 | InterPro:Mem_trans | PFAM:PF03547 | PANTHER:PTHR31752 | PANTHER:PTHR31752:SF2 | TIGRFAMs:TIGR00946 |
| TMHMM:TMhelix | UniParc:UPI00015CA587 | ArrayExpress:VIT_04s0023g00320 | EnsemblPlantsGene:VIT_04s0023g00320 | EnsemblPlants:VIT_04s0023g00320.t01 | unigene:Vvi.10401 |
| RefSeq:XP_002279191 | RefSeq:XP_002279191.1 | SEG:seg | : | : | : |
Description
Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:D7SPS3]
Coordinates
chr4:+:16483873..16487262
Molecular Weight (calculated)
39088.8 Da
IEP (calculated)
7.365
GRAVY (calculated)
0.797
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGWEDVYKV VVAMLPLYVA LVLGYGSVKW WRIFTPDQCD AINRLVCYFT LPLFTFEFTA HVDPFKMNYL FIGADAVSKL IIVLVLALWA KCSSKGSYCW
101: SITSFSLATL TNSLVVGVPL IKAMYGPLGV DLVVQSSVVQ AIIWLTLLLF VLEFRRTGTG ISSNTTMGDS GVIEVEPGKD LETNEMVVST RLSFWSLMRK
201: VWLKLAQNPN SYACIIGIVW AFIANRWHFE MPSIMEGSIL IMSRAGTGTA MFSMGLFMAM QEKIIACGTT LTVFGMVLRF IAGPAAMAIG AIAVGLHGDV
301: LRIAIIQAAV PQSITSFIYA KEYGLHADVL STAVIFGMIV SLPLLVGYYA VLEFLN
101: SITSFSLATL TNSLVVGVPL IKAMYGPLGV DLVVQSSVVQ AIIWLTLLLF VLEFRRTGTG ISSNTTMGDS GVIEVEPGKD LETNEMVVST RLSFWSLMRK
201: VWLKLAQNPN SYACIIGIVW AFIANRWHFE MPSIMEGSIL IMSRAGTGTA MFSMGLFMAM QEKIIACGTT LTVFGMVLRF IAGPAAMAIG AIAVGLHGDV
301: LRIAIIQAAV PQSITSFIYA KEYGLHADVL STAVIFGMIV SLPLLVGYYA VLEFLN
001: MINCGDVYKV IEAMVPLYVA LILGYGSVKW WHIFTRDQCD AINRLVCYFT LPLFTIEFTA HVDPFNMNYR FIAADVLSKV IIVTVLALWA KYSNKGSYCW
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H
101: SITSFSLCTL TNSLVVGVPL AKAMYGQQAV DLVVQSSVFQ AIVWLTLLLF VLEFRKAGFS SNNISDVQVD NINIESGKRE TVVVGEKSFL EVMSLVWLKL
201: ATNPNCYSCI LGIAWAFISN RWHLELPGIL EGSILIMSKA GTGTAMFNMG IFMALQEKLI VCGTSLTVMG MVLKFIAGPA AMAIGSIVLG LHGDVLRVAI
301: IQAALPQSIT SFIFAKEYGL HADVLSTAVI FGMLVSLPVL VAYYAALEFI H
Arabidopsis Description
PIN5Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178UIR3]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.