Factsheet for VIT_17s0000g02420.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
golgi 3
cytosol 1
extracellular 2
plasma membrane 4
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g05060.t01
VIT_10s0003g04320.t01
VIT_14s0108g00430.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73590.1	VIT_10s0003g04320.t01	AT2G34650.1	17889649
AT1G73590.1	VIT_08s0007g05060.t01	AT2G36910.1	17237354
AT1G73590.1	VIT_14s0108g00430.t01	AT3G28860.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48642	Soybean	plasma membrane	86.53	84.96
KRH41847	Soybean	golgi, plasma membrane	83.67	82.42
KRH39071	Soybean	plasma membrane	57.07	80.71
Solyc03g118740.2.1	Tomato	golgi, plasma membrane	81.65	79.38
PGSC0003DMT400014752	Potato	golgi, plasma membrane	81.82	79.15
CDX82059	Canola	golgi, plasma membrane	68.01	76.81
CDX96484	Canola	plasma membrane	68.35	75.89
CDY47745	Canola	golgi, plasma membrane	72.56	75.09
VIT_08s0040g01220.t01	Wine grape	plasma membrane	73.4	72.79
Bra015983.1-P	Field mustard	plasma membrane	75.42	72.49
VIT_08s0040g01230.t01	Wine grape	golgi, plasma membrane	72.56	72.19
Bra008105.1-P	Field mustard	golgi, plasma membrane	74.75	72.08
AT1G73590.1	Thale cress	plasma membrane	75.42	72.03
CDY72296	Canola	golgi, plasma membrane	54.21	71.08
VIT_01s0011g04860.t01	Wine grape	golgi, plasma membrane	70.37	64.41
VIT_11s0052g00440.t01	Wine grape	plasma membrane	63.13	59.52
VIT_14s0108g00020.t01	Wine grape	endoplasmic reticulum, plasma membrane	34.18	56.86
VIT_18s0001g15420.t01	Wine grape	plasma membrane	50.51	54.55
VIT_05s0062g01120.t01	Wine grape	plasma membrane	40.74	52.27
VIT_04s0023g00320.t01	Wine grape	plasma membrane	29.29	48.88
VIT_04s0023g00330.t01	Wine grape	extracellular, golgi	6.23	44.05
VIT_04s0023g00450.t01	Wine grape	golgi, plasma membrane	24.41	40.17
CDX85566	Canola	cytosol	2.86	6.16

Protein Annotations

EntrezGene:100249181	wikigene:100249181	MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	EMBL:AM481015	InterPro:Auxin_eff_plant
ProteinID:CAN64182	ProteinID:CAN64182.1	ProteinID:CCB43278	ProteinID:CCB43278.1	UniProt:F6GSK5	EMBL:FN594950
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005886	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009719	GO:GO:0009734	GO:GO:0009926	GO:GO:0009987	GO:GO:0010252	GO:GO:0010315
GO:GO:0010329	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EntrezGene:LOC100249181	wikigene:LOC100249181
InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF14	TIGR:TC70724	TIGRFAMs:TIGR00946
TMHMM:TMhelix	UniParc:UPI00021091B2	ArrayExpress:VIT_17s0000g02420	EnsemblPlantsGene:VIT_17s0000g02420	EnsemblPlants:VIT_17s0000g02420.t01	RefSeq:XP_002282220
RefSeq:XP_002282220.1	RefSeq:XP_002282246	RefSeq:XP_002282246.1	RefSeq:XP_003634207	RefSeq:XP_003634207.1	SEG:seg

Description

Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:F6GSK5]

Coordinates

chr17:+:2148995..2152470

Molecular Weight (calculated)

65137.9 Da

IEP (calculated)

9.222

GRAVY (calculated)

0.084

Length

594 amino acids

Sequence
(BLAST)

001: MTAVVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIS TNDPYAMNFR FIAADTLQKI IVLAVLAVWS NVSKRGCLEW TITLFSLSTL
101: PNTLVMGIPL LKGMYGEYSG SLMVQIVVLQ CIIWYTLMLF LFEYRGAKML ISEQFPDTAG SIVSIHVDSD IMSLDGRQAL ETEAEIKEDG KLHVTVRKSN
201: ASRSDIFSRR SQGLSSTTPR PSNLTNAEIY SLQSSRNPTP RGSSFNHTDF YSMVAGGRNS NFGSSDVYGL TTSRGPTPRP SNYEEDGNNN NKIRFHYHAQ
301: GGNHYPAPNP GMFSPTGSKN VASAAAAKKP NGQAQQKPDE GTRDLHMFVW SSSASPVSDV FGGHEYGAND QNVKERVAVS PGKVEGHREN QEDYLERDDF
401: SFGNRVLAQE MNNHEGEKVG DGKAKAMPPA SVMTRLILIM VWRKLIRNPN TYSSLIGLIW SLVSFKWKVQ MPAIIEKSIA ILSDAGLGMA MFSLGLFMAL
501: QPRIIACGNS IAVFAMAVRF LTGPAVMAAA SIAVGLRGVL LRVAIVQAAL PQGIVPFVFA KEYNVHPDIL STGVIFGMLI ALPITLVYYI LLGI

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.