Factsheet for Bra008105.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005403.1-P
Bra010996.1-P
Bra012474.1-P
Bra017216.1-P
Bra021925.1-P
Bra023087.1-P
Bra024741.1-P
Bra025359.1-P
Bra035030.1-P
Bra039042.1-P
Bra039992.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73590.1	Bra010996.1-P	AT1G25490.1	17889649
AT1G73590.1	Bra012474.1-P	AT1G25490.1	17889649
AT1G73590.1	Bra024741.1-P	AT1G25490.1	17889649
AT1G73590.1	Bra035030.1-P	AT1G25490.1	17889649
AT1G73590.1	Bra039992.1-P	AT1G25490.1	17889649
AT1G73590.1	Bra005403.1-P	AT2G34650.1	17889649
AT1G73590.1	Bra021925.1-P	AT2G34650.1	17889649
AT1G73590.1	Bra017216.1-P	AT2G36910.1	17237354
AT1G73590.1	Bra023087.1-P	AT2G36910.1	17237354
AT1G73590.1	Bra025359.1-P	AT3G28860.1	17237354
AT1G73590.1	Bra039042.1-P	AT3G28860.1	17237354

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47745	Canola	golgi, plasma membrane	92.21	98.95
CDX82059	Canola	golgi, plasma membrane	84.42	98.86
AT1G73590.1	Thale cress	plasma membrane	94.64	93.73
Bra015983.1-P	Field mustard	plasma membrane	93.34	93.04
KRH48642	Soybean	plasma membrane	75.32	76.69
KRH41847	Soybean	golgi, plasma membrane	73.86	75.46
VIT_17s0000g02420.t01	Wine grape	plasma membrane	72.08	74.75
KRH39071	Soybean	plasma membrane	50.81	74.52
Solyc03g118740.2.1	Tomato	golgi, plasma membrane	73.38	73.98
PGSC0003DMT400014752	Potato	golgi, plasma membrane	72.73	72.96
Bra012358.1-P	Field mustard	golgi, plasma membrane	61.85	63.18
Bra016366.1-P	Field mustard	golgi, plasma membrane	56.17	59.25
Bra002763.1-P	Field mustard	plasma membrane	57.14	59.16
Bra006834.1-P	Field mustard	plasma membrane	60.39	57.94
Bra003938.1-P	Field mustard	golgi, plasma membrane	50.65	57.14
Bra035648.1-P	Field mustard	plasma membrane	59.9	55.82
Bra016173.1-P	Field mustard	plasma membrane	55.84	54.43
Bra008615.1-P	Field mustard	golgi, plasma membrane, vacuole	28.41	50.29
Bra015694.1-P	Field mustard	plasma membrane	46.59	50.0
Bra008722.1-P	Field mustard	golgi, plasma membrane, vacuole	26.3	47.51
Bra026669.1-P	Field mustard	golgi, plasma membrane	57.47	44.42
Bra023503.1-P	Field mustard	golgi, plasma membrane	23.38	24.12

Protein Annotations

MapMan:11.2.4.1.1	MapMan:24.2.5.2.1	InterPro:Auxin_eff_plant	EnsemblPlantsGene:Bra008105	EnsemblPlants:Bra008105.1	EnsemblPlants:Bra008105.1-P
GO:GO:0005575	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009719
GO:GO:0009734	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M4CV59
InterPro:Mem_trans	PFAM:PF03547	PANTHER:PTHR31752	PANTHER:PTHR31752:SF14	TIGRFAMs:TIGR00946	TMHMM:TMhelix
UniParc:UPI00025455B3	SEG:seg	:	:	:	:

Description

AT1G73590 (E=0.0) PIN1, ATPIN1 | PIN1 (PIN-FORMED 1); transporter

Coordinates

chrA02:+:13146483..13149339

Molecular Weight (calculated)

66616.5 Da

IEP (calculated)

9.335

GRAVY (calculated)

0.091

Length

616 amino acids

Sequence
(BLAST)

001: MITATDFYHV MTAMVPLYVA MILAYGSVKW WKIFTPTQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSPNGSLDW
101: TITLFSLTTL PNTLVMGIPL LKGMYGDFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMAAGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGAKP
301: AAGAGRFPYQ SGGSGGGGAH YPAPNPGMFS PQSGGGGTVA KGNSAVVGGK RGNGQDGNGR DLHMFVWSSS ASPVSDVFGG GGNHHSDYAA ATNEQHKDVK
401: ISVPQGNSND SQYVEREEFS FGNKDDDSKV LATDNNISNK AQQQQPKVMP PTSVMTRLIL IMVWRKLIRN PNSYSSLFGI TWSLISFKWN IEMPAIIAKS
501: ISILSDAGLG MAMFSLGLFM ALNPRIIACG NRRAAFAAGM RFLAGPAVMT VASYAVGLRG VLLRVAIIQA ALPQGIVPFV FAKEYNVHPD ILSTAVIFGM
601: LIALPITLLY YILLGL

Best Arabidopsis Sequence Match ( AT1G73590.1 )
(BLAST)

001: MITAADFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIA ANNPYAMNLR FLAADSLQKV IVLSLLFLWC KLSRNGSLDW
101: TITLFSLSTL PNTLVMGIPL LKGMYGNFSG DLMVQIVVLQ CIIWYTLMLF LFEYRGAKLL ISEQFPDTAG SIVSIHVDSD IMSLDGRQPL ETEAEIKEDG
201: KLHVTVRRSN ASRSDIYSRR SQGLSATPRP SNLTNAEIYS LQSSRNPTPR GSSFNHTDFY SMMASGGGRN SNFGPGEAVF GSKGPTPRPS NYEEDGGPAK
301: PTAAGTAAGA GRFHYQSGGS GGGGGAHYPA PNPGMFSPNT GGGGGTAAKG NAPVVGGKRQ DGNGRDLHMF VWSSSASPVS DVFGGGGGNH HADYSTATND
401: HQKDVKISVP QGNSNDNQYV EREEFSFGNK DDDSKVLATD GGNNISNKTT QAKVMPPTSV MTRLILIMVW RKLIRNPNSY SSLFGITWSL ISFKWNIEMP
501: ALIAKSISIL SDAGLGMAMF SLGLFMALNP RIIACGNRRA AFAAAMRFVV GPAVMLVASY AVGLRGVLLH VAIIQAALPQ GIVPFVFAKE YNVHPDILST
601: AVIFGMLIAL PITLLYYILL GL

Arabidopsis Description

PIN1Auxin efflux carrier component [Source:UniProtKB/TrEMBL;Acc:A0A178WFG7]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.