Factsheet for Bra039992.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002763.1-P
Bra003346.1-P
Bra006834.1-P
Bra007407.1-P
Bra008105.1-P
Bra014874.1-P
Bra015983.1-P
Bra020012.1-P
Bra024329.1-P
Bra026114.1-P
Bra028713.1-P
Bra032371.1-P
Bra033870.1-P
Bra035648.1-P
Bra037327.1-P
Bra037797.1-P
Bra039379.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25490.1	Bra026114.1-P	AT1G15730.1	21798944
AT1G25490.1	Bra014874.1-P	AT1G30260.1	21798944
AT1G25490.1	Bra032371.1-P	AT1G30260.1	21798944
AT1G25490.1	Bra033870.1-P	AT1G31870.1	21798944
AT1G25490.1	Bra008105.1-P	AT1G73590.1	17889649
AT1G25490.1	Bra015983.1-P	AT1G73590.1	17889649
AT1G25490.1	Bra039379.1-P	AT3G13222.1	21798944
AT1G25490.1	Bra003346.1-P	AT3G58630.1	21798944
AT1G25490.1	Bra007407.1-P	AT3G58630.1	21798944
AT1G25490.1	Bra020012.1-P	AT4G00231.1	21798944
AT1G25490.1	Bra037327.1-P	AT4G00231.1	21798944
AT1G25490.1	Bra028713.1-P	AT5G06960.1	21798944
AT1G25490.1	Bra002763.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra006834.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra035648.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra024329.1-P	AT5G64813.1	21798944
AT1G25490.1	Bra037797.1-P	AT5G64813.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035030.1-P	Field mustard	cytosol	99.25	84.62
CDX70737	Canola	cytosol	61.65	68.91
Bra024741.1-P	Field mustard	cytosol	93.23	37.69
AT1G25490.1	Thale cress	cytosol	93.23	21.09
Bra010996.1-P	Field mustard	cytosol	90.23	20.41
Bra012474.1-P	Field mustard	cytosol	86.47	19.62
Bra017348.1-P	Field mustard	cytosol	35.34	18.15
Bra025162.1-P	Field mustard	cytosol	22.56	3.9

Protein Annotations

EnsemblPlants:Bra039992.1	EnsemblPlants:Bra039992.1-P	EnsemblPlantsGene:Bra039992	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	PANTHER:PTHR10648
PANTHER:PTHR10648:SF20	PFscan:PS50077	SUPFAM:SSF48371	UniParc:UPI0002544413	UniProt:M4FFW8	MapMan:35.1

Description

AT1G25490 (E=1e-062) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator

Coordinates

chrA04:+:13250478..13251573

Molecular Weight (calculated)

14832.0 Da

IEP (calculated)

5.131

GRAVY (calculated)

0.106

Length

133 amino acids

Sequence
(BLAST)

001: MVYSIREAAA NNLKRFAEEF GPEWAMQHLV PQVLDMVTNP HYLHRMMVLR AISLMAPVMG SEITCSKFLP VVAEASKDRV PNVKFNVAKL LQSLIPIVDQ
101: SCLVDLSEDP DVDVRYFANQ ALRSIDDAAA AQS

Best Arabidopsis Sequence Match ( AT1G13320.1 )
(BLAST)

001: MSMVDEPLYP IAVLIDELKN DDIQRRLNSI KRLSIIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGGFILYVGG VEYAYVLLPP LETLSTVEET
101: CVREKAVDSL CRIGAQMRES DLVEHFTPLA KRLSAGEWFT ARVSACGIFH IAYPSAPDVL KTELRSIYGQ LCQDDMPMVR RAAATNLGKF AATIESAHLK
201: TDIMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVA HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTD LVPAYARLLC DNEAEVRIAA
301: AGKVTKFCRI LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDEKLGAL CMQWLQDKVH SIREAAANNL KRLAEEFGPE WAMQHIVPQV LEMINNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPAVI TASKDRVPNI KFNVAKMMQS LIPIVDQAVV ENMIRPCLVE LSEDPDVDVR YFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA3Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38951]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.