Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra006216.1-P | |
| Bra008801.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30260.1 | Bra006216.1-P | AT5G13810.1 | 21798944 |
| AT1G30260.1 | Bra008801.1-P | AT5G13810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032371.1-P | Field mustard | plastid | 81.52 | 77.32 |
| AT1G30260.1 | Thale cress | mitochondrion | 72.83 | 69.07 |
| CDX77604 | Canola | plastid | 97.83 | 66.67 |
| Solyc11g020860.1.1 | Tomato | cytosol | 41.3 | 46.91 |
| KRH58694 | Soybean | cytosol, mitochondrion | 44.57 | 46.07 |
| Bra013495.1-P | Field mustard | cytosol, mitochondrion | 47.83 | 45.83 |
| PGSC0003DMT400023953 | Potato | cytosol | 41.3 | 45.78 |
| Bra038787.1-P | Field mustard | cytosol, mitochondrion | 41.3 | 44.71 |
| PGSC0003DMT400029139 | Potato | plastid | 40.22 | 43.53 |
| PGSC0003DMT400059173 | Potato | plastid | 40.22 | 43.53 |
| KRH42584 | Soybean | cytosol, mitochondrion | 41.3 | 42.22 |
| PGSC0003DMT400028963 | Potato | cytosol, plastid | 38.04 | 41.67 |
| PGSC0003DMT400059172 | Potato | cytosol, plastid | 35.87 | 38.82 |
Protein Annotations
Description
AT1G30260 (E=1e-022) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cytokinin stimulus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: galactosyltransferase family protein (TAIR:AT4G21060.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA07:-:5707243..5707521
Molecular Weight (calculated)
10114.9 Da
IEP (calculated)
10.460
GRAVY (calculated)
-0.322
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MATSRLARFI TEVAPPQVVT VMRRRTAKVL DTIKEEEREV GTDHSMFSSS LTSKVSPFTS PCSASSSSAS FSSGRTYFPV TDNRSSFPVF KN
1: MATSRLARFI TEVAPPQFVT VMRRRTAKVL DTIKEEEREV GTDSIFPSSF NSKKISSPFT SPYSSSVSSA SASASCTSGL NKFPVTENRG SFPVFKN
Arabidopsis Description
At1g30260/F12P21_9 [Source:UniProtKB/TrEMBL;Acc:Q9C754]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.