Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015465 | |
| PGSC0003DMT400047487 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30260.1 | PGSC0003DMT400015465 | AT5G13810.1 | 21798944 |
| AT1G30260.1 | PGSC0003DMT400047487 | AT5G13810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400028963 | Potato | cytosol, plastid | 89.41 | 90.48 |
| PGSC0003DMT400029139 | Potato | plastid | 82.35 | 82.35 |
| PGSC0003DMT400059173 | Potato | plastid | 81.18 | 81.18 |
| PGSC0003DMT400023953 | Potato | cytosol | 70.59 | 72.29 |
| KRH42584 | Soybean | cytosol, mitochondrion | 50.59 | 47.78 |
| CDX82793 | Canola | cytosol, mitochondrion | 41.18 | 46.67 |
| KRH58694 | Soybean | cytosol, mitochondrion | 48.24 | 46.07 |
| CDY58488 | Canola | cytosol, mitochondrion | 42.35 | 42.35 |
| Bra038787.1-P | Field mustard | cytosol, mitochondrion | 41.18 | 41.18 |
| CDX94021 | Canola | cytosol, mitochondrion | 41.18 | 41.18 |
| CDX79027 | Canola | cytosol, mitochondrion | 43.53 | 38.54 |
| Bra013495.1-P | Field mustard | cytosol, mitochondrion | 42.35 | 37.5 |
| CDY26279 | Canola | plastid | 42.35 | 37.11 |
| Bra032371.1-P | Field mustard | plastid | 42.35 | 37.11 |
| Bra014874.1-P | Field mustard | cytosol, plastid | 38.82 | 35.87 |
| CDY49624 | Canola | plastid | 40.0 | 35.05 |
| AT1G30260.1 | Thale cress | mitochondrion | 40.0 | 35.05 |
| CDX77604 | Canola | plastid | 37.65 | 23.7 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400059172 | EnsemblPlantsGene:PGSC0003DMG401022984 | ncoils:Coil | PANTHER:PTHR35101 | PANTHER:PTHR35101:SF9 | PGSC:PGSC0003DMG401022984 |
| SEG:seg | UniParc:UPI000295C4DE | UniProt:M1C3W6 | MapMan:35.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401022984]
Coordinates
chr7:+:6068691..6069665
Molecular Weight (calculated)
9336.1 Da
IEP (calculated)
10.562
GRAVY (calculated)
-0.362
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MTNARIARFV TEVAPPQFVN VMRHRASKLL ETIKEEEREA STSEALSLKS SLLSSSSTYS ALPSNAKNSK SFLKEVQRSL SAFGS
1: MATSRLARFI TEVAPPQFVT VMRRRTAKVL DTIKEEEREV GTDSIFPSSF NSKKISSPFT SPYSSSVSSA SASASCTSGL NKFPVTENRG SFPVFKN
Arabidopsis Description
At1g30260/F12P21_9 [Source:UniProtKB/TrEMBL;Acc:Q9C754]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.