Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013495.1-P | Field mustard | cytosol, mitochondrion | 98.96 | 98.96 |
| CDX82793 | Canola | cytosol, mitochondrion | 75.0 | 96.0 |
| CDY58488 | Canola | cytosol, mitochondrion | 70.83 | 80.0 |
| CDX94021 | Canola | cytosol, mitochondrion | 68.75 | 77.65 |
| Solyc11g020860.1.1 | Tomato | cytosol | 41.67 | 49.38 |
| PGSC0003DMT400029139 | Potato | plastid | 42.71 | 48.24 |
| PGSC0003DMT400059173 | Potato | plastid | 42.71 | 48.24 |
| PGSC0003DMT400023953 | Potato | cytosol | 40.62 | 46.99 |
| PGSC0003DMT400028963 | Potato | cytosol, plastid | 39.58 | 45.24 |
| PGSC0003DMT400059172 | Potato | cytosol, plastid | 38.54 | 43.53 |
| CDY26279 | Canola | plastid | 42.71 | 42.27 |
| KRH58694 | Soybean | cytosol, mitochondrion | 38.54 | 41.57 |
| CDY49624 | Canola | plastid | 41.67 | 41.24 |
| KRH42584 | Soybean | cytosol, mitochondrion | 36.46 | 38.89 |
| CDX77604 | Canola | plastid | 44.79 | 31.85 |
Protein Annotations
| EnsemblPlants:CDX79027 | EnsemblPlantsGene:GSBRNA2T00131558001 | PANTHER:PTHR35101 | PANTHER:PTHR35101:SF1 | ProteinID:CDX79027 | ProteinID:CDX79027.1 |
| SEG:seg | UniParc:UPI0004EB5FB0 | MapMan:35.2 | : | : | : |
Description
BnaA01g10940D
Coordinates
chrLK031816:+:1418545..1418835
Molecular Weight (calculated)
10775.8 Da
IEP (calculated)
10.109
GRAVY (calculated)
-0.521
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MATSRLARFV SEVAPPQFVT VMRRHRAAKQ KLDTIKEEEY KDDCFSGGMM MTMMSNKMAS SHHHAYSSSS TSVSSSGSTS KSFHVDVRRS FSVFEN
1: MATSRLARFI TEVAPPQFVT VMRRRTAKVL DTIKEEEREV GTDSIFPSSF NSKKISSPFT SPYSSSVSSA SASASCTSGL NKFPVTENRG SFPVFKN
Arabidopsis Description
At1g30260/F12P21_9 [Source:UniProtKB/TrEMBL;Acc:Q9C754]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.