Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30260.1 | CDX70521 | AT5G13810.1 | 21798944 |
| AT1G30260.1 | CDX78539 | AT5G13810.1 | 21798944 |
| AT1G30260.1 | CDY67732 | AT5G13810.1 | 21798944 |
| AT1G30260.1 | CDY70634 | AT5G13810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014874.1-P | Field mustard | cytosol, plastid | 66.67 | 97.83 |
| CDY26279 | Canola | plastid | 54.07 | 75.26 |
| CDY49624 | Canola | plastid | 54.07 | 75.26 |
| AT1G30260.1 | Thale cress | mitochondrion | 48.15 | 67.01 |
| CDX82793 | Canola | cytosol, mitochondrion | 27.41 | 49.33 |
| Solyc11g020860.1.1 | Tomato | cytosol | 28.89 | 48.15 |
| PGSC0003DMT400023953 | Potato | cytosol | 28.89 | 46.99 |
| KRH58694 | Soybean | cytosol, mitochondrion | 30.37 | 46.07 |
| CDX79027 | Canola | cytosol, mitochondrion | 31.85 | 44.79 |
| CDX94021 | Canola | cytosol, mitochondrion | 28.15 | 44.71 |
| CDY58488 | Canola | cytosol, mitochondrion | 28.15 | 44.71 |
| PGSC0003DMT400029139 | Potato | plastid | 26.67 | 42.35 |
| PGSC0003DMT400059173 | Potato | plastid | 26.67 | 42.35 |
| KRH42584 | Soybean | cytosol, mitochondrion | 28.15 | 42.22 |
| PGSC0003DMT400028963 | Potato | cytosol, plastid | 25.19 | 40.48 |
| PGSC0003DMT400059172 | Potato | cytosol, plastid | 23.7 | 37.65 |
Protein Annotations
| EnsemblPlants:CDX77604 | EnsemblPlantsGene:GSBRNA2T00128526001 | PANTHER:PTHR35101 | ProteinID:CDX77604 | ProteinID:CDX77604.1 | SEG:seg |
| UniParc:UPI0004EE9070 | MapMan:35.2 | : | : | : | : |
Description
BnaA07g07420D
Coordinates
chrLK031811:-:2227889..2228671
Molecular Weight (calculated)
14782.4 Da
IEP (calculated)
8.904
GRAVY (calculated)
-0.181
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSRLARFI TEVAPPQVVT VMRRRTAKVL DTIKEEEREV GTDHSMFSSS LTSKVSPFTS PCSASSSSAS FSSGRTYFPV TDNRSSFPFV YVNLDFPVSS
101: GDSVDQNRIS IVKPKPVDSN VCGSGRDFVR FPCIV
101: GDSVDQNRIS IVKPKPVDSN VCGSGRDFVR FPCIV
1: MATSRLARFI TEVAPPQFVT VMRRRTAKVL DTIKEEEREV GTDSIFPSSF NSKKISSPFT SPYSSSVSSA SASASCTSGL NKFPVTENRG SFPVFKN
Arabidopsis Description
At1g30260/F12P21_9 [Source:UniProtKB/TrEMBL;Acc:Q9C754]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.