Factsheet for Bra028713.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000980.1-P
Bra004617.1-P
Bra016938.1-P
Bra027690.1-P
Bra028713.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	Bra027690.1-P	AT1G64280.1	10659709
AT5G06960.1	Bra027690.1-P	AT1G64280.1	10662863
AT5G06960.1	Bra027690.1-P	AT1G64280.1	12383081
AT5G06960.1	Bra027690.1-P	AT1G64280.1	15634206
AT5G06960.1	Bra004617.1-P	AT2G41370.1	21798944
AT5G06960.1	Bra016938.1-P	AT2G41370.1	21798944
AT5G06960.1	Bra000980.1-P	AT3G02000.1	19218396
AT5G06960.1	Bra028713.1-P	AT5G06960.1	17098811
AT5G06960.1	Bra028713.1-P	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14061	Canola	nucleus	99.69	99.69
CDY05010	Canola	nucleus	99.39	99.39
AT5G06960.1	Thale cress	nucleus	88.34	87.27
Bra009241.1-P	Field mustard	nucleus	77.3	81.29
Bra034767.1-P	Field mustard	nucleus	81.9	80.66
Bra001443.1-P	Field mustard	nucleus	80.98	79.76
Bra038705.1-P	Field mustard	nucleus	80.37	78.44
KRH36324	Soybean	nucleus	75.46	74.1
GSMUA_Achr8P05800_001	Banana	nucleus	75.15	73.8
PGSC0003DMT400024428	Potato	nucleus	73.31	73.77
Solyc11g064950.1.1	Tomato	nucleus	73.31	73.77
Os01t0279900-01	Rice	nucleus	73.62	72.95
GSMUA_Achr3P25020_001	Banana	nucleus	74.23	72.89
EES02530	Sorghum	nucleus	73.01	72.12
Solyc01g008730.2.1	Tomato	nucleus	72.09	71.87
TraesCS3A01G190700.2	Wheat	nucleus	72.7	71.39
TraesCS3B01G220400.2	Wheat	nucleus	72.7	71.39
KXG39494	Sorghum	nucleus	73.01	71.04
HORVU3Hr1G042790.4	Barley	nucleus	72.09	71.0
TraesCS3D01G194800.2	Wheat	nucleus	72.09	70.78
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	32.21	70.47
KXG36997	Sorghum	nucleus	71.17	69.67
Os07t0687700-01	Rice	nucleus	71.17	69.46
Zm00001d022542_P002	Maize	nucleus	70.55	69.07
Os03t0318600-01	Rice	nucleus	70.55	69.07
PGSC0003DMT400026710	Potato	mitochondrion	37.12	68.75
TraesCS2D01G096800.2	Wheat	nucleus	70.55	68.45
TraesCS2B01G113200.2	Wheat	nucleus	70.55	68.45
TraesCS2A01G097500.2	Wheat	nucleus	70.25	68.15
TraesCS4B01G178600.1	Wheat	nucleus	69.33	67.66
HORVU4Hr1G052330.3	Barley	nucleus	69.33	67.66
TraesCS4A01G126300.2	Wheat	nucleus	69.33	67.46
TraesCS4D01G180200.4	Wheat	nucleus	69.33	67.46
HORVU2Hr1G016580.5	Barley	nucleus	68.71	66.47
KXG22247	Sorghum	nucleus	61.35	60.24
Os05t0492000-00	Rice	nucleus	59.51	58.79
Zm00001d008225_P001	Maize	nucleus	73.31	56.9
KRG93068	Soybean	nucleus	75.77	55.63
Zm00001d028936_P001	Maize	nucleus	65.34	54.48
Zm00001d010658_P001	Maize	nucleus	57.06	53.91
VIT_13s0084g00660.t01	Wine grape	nucleus	77.3	53.73
KRH20680	Soybean	nucleus	76.69	53.3
GSMUA_Achr10P...	Banana	nucleus	74.54	53.17
TraesCS1A01G096300.1	Wheat	nucleus	53.99	52.54
TraesCS1B01G127400.1	Wheat	nucleus	53.37	51.18
TraesCS1D01G105300.1	Wheat	nucleus	53.07	51.03
GSMUA_Achr11P...	Banana	nucleus	74.54	50.84
Bra015646.1-P	Field mustard	nucleus	52.76	50.74
KRH13334	Soybean	nucleus	76.99	50.5
EES03778	Sorghum	nucleus	71.78	50.0
HORVU3Hr1G079010.5	Barley	nucleus	73.01	49.9
TraesCS3A01G334100.1	Wheat	nucleus	72.7	49.89
TraesCS3B01G365100.1	Wheat	nucleus	72.09	49.27
TraesCS3D01G327600.1	Wheat	nucleus	72.09	49.27
HORVU1Hr1G068220.1	Barley	nucleus	50.31	47.81
Bra009233.1-P	Field mustard	cytosol	40.8	47.5
Bra024366.1-P	Field mustard	nucleus	52.76	46.87
Bra016389.1-P	Field mustard	nucleus	51.53	45.65
Bra028604.1-P	Field mustard	nucleus	50.61	45.58
Bra031364.1-P	Field mustard	nucleus	52.76	45.5
Bra009063.1-P	Field mustard	nucleus	50.61	45.33
Zm00001d043153_P001	Maize	nucleus	58.28	45.02
Bra004329.1-P	Field mustard	nucleus	60.74	44.9
Bra031871.1-P	Field mustard	nucleus	50.92	44.86
Zm00001d012553_P003	Maize	nucleus	61.66	42.77
Bra031622.1-P	Field mustard	nucleus	54.91	41.82
Bra037809.1-P	Field mustard	nucleus	47.85	39.8
HORVU0Hr1G032230.4	Barley	nucleus	40.8	37.89
Bra018634.1-P	Field mustard	nucleus	54.6	37.47
Os01t0808100-01	Rice	nucleus	41.41	37.09
Bra005914.1-P	Field mustard	nucleus	47.85	35.94
Bra037374.1-P	Field mustard	nucleus	32.21	33.44

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	MapMan:26.8.3.1.2	EnsemblPlantsGene:Bra028713	EnsemblPlants:Bra028713.1
EnsemblPlants:Bra028713.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009863
GO:GO:0009987	GO:GO:0042802	GO:GO:0043565	InterPro:IPR004827	InterPro:IPR025422	UniProt:M4EIU8
PFAM:PF00170	PFAM:PF14144	ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952
PANTHER:PTHR22952:SF244	SMART:SM00338	SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI00025431E5	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

AT5G06960 (E=3e-135) OBF5, TGA5 | OBF5 (OCS-ELEMENT BINDING FACTOR 5); DNA binding / protein binding / transcription factor

Coordinates

chrA02:+:2417973..2419679

Molecular Weight (calculated)

36675.2 Da

IEP (calculated)

9.257

GRAVY (calculated)

-0.742

Length

326 amino acids

Sequence
(BLAST)

001: MGDTSPRTSG STDGDMDQNN LMYDGGHVGE SSDRSKEKMD QKTVRRLAQN REAARKSRLR KKAYVQQLEN SRLKLTQLEQ ELQRARQQGV FISSSGDQAH
101: STTGNGAMAF DAEYRRWQED KNRKMKELSS ALDSHASEPE LRTIVETVLA HYEELFRIKS NAAKNDVFHL LSGMWKTPAE RCFLWLGGFR SSDLLKLIAS
201: QVEPLTEQQS QDLNNLQESS QQAEDALSQG MDSLQQSLSE TLSSGTLGSS SSGNVANYMG QMAMAMGKLG TLEGFIRQAD NLRLQTYQQM LRKLTTRQSA
301: RALLAIHEYS LRLRALSSLW LARPRE

Best Arabidopsis Sequence Match ( AT5G06960.1 )
(BLAST)

001: MGDTSPRTSV STDGDTDHNN LMFDEGHLGI GASDSSDRSK SKMDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISSSG
101: DQAHSTAGDG AMAFDVEYRR WQEDKNRQMK ELSSAIDSHA TDSELRIIVD GVIAHYEELY RIKGNAAKSD VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LIASQLEPLT EQQSLDINNL QQSSQQAEDA LSQGMDNLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT YQQMVRLLTT
301: RQSARALLAV HNYTLRLRAL SSLWLARPRE

Arabidopsis Description

TGA5TGA5 [Source:UniProtKB/TrEMBL;Acc:A0A178UIF0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.