Factsheet for HORVU1Hr1G068220.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G003840.1
HORVU0Hr1G032230.4
HORVU1Hr1G068220.1
HORVU2Hr1G016580.5
HORVU3Hr1G019230.6
HORVU3Hr1G042790.4
HORVU3Hr1G042830.1
HORVU3Hr1G079010.5
HORVU3Hr1G106880.5
HORVU4Hr1G052330.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	10659709
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	10662863
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	12383081
AT5G06960.1	HORVU3Hr1G019230.6	AT1G64280.1	15634206
AT5G06960.1	HORVU3Hr1G106880.5	AT2G41370.1	21798944
AT5G06960.1	HORVU0Hr1G003840.1	AT3G02000.1	19218396
AT5G06960.1	HORVU0Hr1G032230.4	AT5G06960.1	17098811
AT5G06960.1	HORVU1Hr1G068220.1	AT5G06960.1	17098811
AT5G06960.1	HORVU2Hr1G016580.5	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G042790.4	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G042830.1	AT5G06960.1	17098811
AT5G06960.1	HORVU3Hr1G079010.5	AT5G06960.1	17098811
AT5G06960.1	HORVU4Hr1G052330.3	AT5G06960.1	17098811
AT5G06960.1	HORVU0Hr1G032230.4	AT5G06960.1	21798944
AT5G06960.1	HORVU1Hr1G068220.1	AT5G06960.1	21798944
AT5G06960.1	HORVU2Hr1G016580.5	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G042790.4	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G042830.1	AT5G06960.1	21798944
AT5G06960.1	HORVU3Hr1G079010.5	AT5G06960.1	21798944
AT5G06960.1	HORVU4Hr1G052330.3	AT5G06960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G096300.1	Wheat	nucleus	75.22	77.01
TraesCS1B01G127400.1	Wheat	nucleus	74.93	75.59
TraesCS1D01G105300.1	Wheat	nucleus	74.64	75.52
PGSC0003DMT400024428	Potato	nucleus	54.23	57.41
Solyc11g064950.1.1	Tomato	nucleus	54.23	57.41
KRH36324	Soybean	nucleus	53.94	55.72
HORVU0Hr1G032230.4	Barley	nucleus	56.85	55.56
Os05t0492000-00	Rice	nucleus	53.35	55.45
HORVU4Hr1G052330.3	Barley	nucleus	53.94	55.39
KXG22247	Sorghum	nucleus	52.77	54.52
Solyc01g008730.2.1	Tomato	nucleus	51.9	54.43
HORVU3Hr1G042790.4	Barley	nucleus	52.48	54.38
AT5G06960.1	Thale cress	nucleus	51.02	53.03
AT5G06950.5	Thale cress	nucleus	51.02	53.03
Bra009241.1-P	Field mustard	nucleus	47.81	52.9
HORVU2Hr1G016580.5	Barley	nucleus	51.9	52.82
Bra034767.1-P	Field mustard	nucleus	50.73	52.57
CDY08443	Canola	nucleus	50.73	52.57
KRH66777	Soybean	nucleus	44.02	52.07
Zm00001d010658_P001	Maize	nucleus	52.19	51.88
CDX98971	Canola	nucleus	49.56	51.83
CDX70053	Canola	nucleus	49.27	51.68
CDY50562	Canola	nucleus	49.85	51.2
Bra038705.1-P	Field mustard	nucleus	49.85	51.2
CDX73830	Canola	nucleus	49.27	51.06
CDY00762	Canola	nucleus	49.27	51.06
Bra001443.1-P	Field mustard	nucleus	49.27	51.06
CDY52616	Canola	nucleus	49.56	51.05
HORVU3Hr1G042830.1	Barley	cytosol, mitochondrion, nucleus, plastid	21.87	50.34
CDY05010	Canola	nucleus	47.81	50.31
Bra028713.1-P	Field mustard	nucleus	47.81	50.31
CDY14061	Canola	nucleus	47.52	50.0
AT3G12250.4	Thale cress	nucleus	50.44	48.73
CDY42138	Canola	nucleus	45.48	48.15
PGSC0003DMT400026710	Potato	mitochondrion	23.03	44.89
Solyc10g080780.1.1	Tomato	cytosol	34.69	44.24
PGSC0003DMT400060922	Potato	nucleus	34.4	44.03
KRG93068	Soybean	nucleus	55.1	42.57
PGSC0003DMT400060926	Potato	nucleus	52.77	41.8
VIT_08s0007g05170.t01	Wine grape	nucleus	54.81	41.69
VIT_13s0084g00660.t01	Wine grape	nucleus	56.27	41.15
HORVU7Hr1G042180.5	Barley	nucleus	44.9	40.85
HORVU2Hr1G116130.4	Barley	nucleus	15.74	40.6
Solyc10g080770.1.1	Tomato	nucleus	53.06	40.44
HORVU3Hr1G079010.5	Barley	nucleus	55.98	40.25
KRG95103	Soybean	nucleus	53.64	40.09
KRH20680	Soybean	nucleus	54.81	40.09
HORVU4Hr1G025130.10	Barley	nucleus	41.98	39.67
KRH66771	Soybean	nucleus	53.06	39.57
KRH13334	Soybean	nucleus	54.52	37.63
HORVU1Hr1G073870.2	Barley	nucleus	39.36	25.81
HORVU0Hr1G015710.1	Barley	nucleus	32.94	24.57
HORVU5Hr1G073410.1	Barley	nucleus	39.65	23.99
HORVU5Hr1G053330.5	Barley	nucleus	34.69	23.61
HORVU2Hr1G116090.2	Barley	cytosol	27.41	22.22
HORVU3Hr1G084340.10	Barley	nucleus	26.82	16.17

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	MapMan:15.5.4.7.1	UniProt:A0A287G2G9	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:HORVU1Hr1G068220	EnsemblPlants:HORVU1Hr1G068220.1	InterPro:IPR004827	InterPro:IPR025422	PFAM:PF00170	PFAM:PF14144
ScanProsite:PS00036	PFscan:PS50217	PFscan:PS51806	PANTHER:PTHR22952	PANTHER:PTHR22952:SF206	SMART:SM00338
SUPFAM:SSF57959	InterPro:TGA_domain	UniParc:UPI000B47670A	InterPro:bZIP	SEG:seg	:

Description

No Description!

Coordinates

chrchr1H:-:480728394..480731043

Molecular Weight (calculated)

36612.2 Da

IEP (calculated)

6.387

GRAVY (calculated)

-0.383

Length

343 amino acids

Sequence
(BLAST)

001: MDYGTDASTD PDVDKNQEQE PFEQGHAVLI APSDPSGKTN GKLGPKTLRR LAQNREAARR SRLRKKAYVQ QLESSSLKLA QLEQELRRAR QQGFLSTLGD
101: QADSENASSF YVEYGRWLEG QLQKVEELRA AVSSHADDSD LQAIVDTIIA RWDEIFTLKG AAAKADAFHV LSGAWTTPVE RFFLWLGGFR PSEFLKLLAS
201: RLEPLTEKQL DSIGVLRHSS LQAEGALSTE MEALRQSVAE AVAAAGPSFL SCSAAYSDDG TGEMAAAVAK LGALEGLLRQ GDDLRLRILE ETRRVLTTRQ
301: CARAVLVVSD YFSRMRAXXX XXXXXXXXAH PGEPVRAYSI KKW

Best Arabidopsis Sequence Match ( AT5G06950.1 )
(BLAST)

001: MADTSPRTDV STDDDTDHPD LGSEGALVNT AASDSSDRSK GKMDQKTLRR LAQNREAARK SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGVFISGTG
101: DQAHSTGGNG ALAFDAEHSR WLEEKNKQMN ELRSALNAHA GDSELRIIVD GVMAHYEELF RIKSNAAKND VFHLLSGMWK TPAERCFLWL GGFRSSELLK
201: LLANQLEPMT ERQLMGINNL QQTSQQAEDA LSQGMESLQQ SLADTLSSGT LGSSSSGNVA SYMGQMAMAM GKLGTLEGFI RQADNLRLQT LQQMIRVLTT
301: RQSARALLAI HDYFSRLRAL SSLWLARPRE

Arabidopsis Description

TGA2BZIP transcription factor TGA2 [Source:UniProtKB/TrEMBL;Acc:B2BDR5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.