Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023424_P001 | Maize | nucleus | 63.91 | 74.84 |
| TraesCS4D01G129900.1 | Wheat | nucleus | 97.52 | 65.8 |
| TraesCS4A01G183400.2 | Wheat | nucleus | 96.97 | 65.06 |
| TraesCS4B01G135000.1 | Wheat | nucleus | 97.25 | 62.37 |
| Os11t0152700-01 | Rice | nucleus | 79.06 | 59.3 |
| Os12t0152900-01 | Rice | nucleus | 77.96 | 57.87 |
| KXG22976 | Sorghum | nucleus | 76.31 | 57.35 |
| HORVU3Hr1G042830.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 23.42 | 57.05 |
| Zm00001d052543_P001 | Maize | nucleus | 76.31 | 57.0 |
| OQU82891 | Sorghum | nucleus | 76.58 | 56.97 |
| HORVU2Hr1G016580.5 | Barley | nucleus | 52.34 | 56.38 |
| HORVU4Hr1G052330.3 | Barley | nucleus | 51.79 | 56.29 |
| PGSC0003DMT400067782 | Potato | nucleus | 49.04 | 54.1 |
| HORVU3Hr1G042790.4 | Barley | nucleus | 49.31 | 54.08 |
| Solyc11g068370.1.1 | Tomato | nucleus | 53.72 | 52.42 |
| Bra031622.1-P | Field mustard | nucleus | 57.02 | 48.36 |
| CDY22689 | Canola | nucleus | 56.47 | 47.9 |
| VIT_06s0080g00360.t01 | Wine grape | nucleus | 64.19 | 46.6 |
| GSMUA_Achr2P06770_001 | Banana | nucleus | 59.23 | 44.98 |
| PGSC0003DMT400018306 | Potato | nucleus | 60.33 | 44.88 |
| Solyc06g074320.2.1 | Tomato | nucleus | 61.16 | 44.31 |
| AT1G08320.4 | Thale cress | nucleus | 58.13 | 43.87 |
| Bra018634.1-P | Field mustard | nucleus | 57.02 | 43.58 |
| KRH26635 | Soybean | nucleus | 58.4 | 43.44 |
| KRH22685 | Soybean | nucleus | 58.13 | 43.06 |
| CDX93571 | Canola | nucleus | 56.47 | 42.89 |
| CDX95068 | Canola | nucleus | 56.47 | 42.89 |
| CDY06309 | Canola | nucleus | 57.02 | 42.77 |
| KRH25227 | Soybean | nucleus | 58.68 | 42.52 |
| HORVU7Hr1G042180.5 | Barley | nucleus | 43.8 | 42.18 |
| HORVU1Hr1G068220.1 | Barley | nucleus | 39.67 | 41.98 |
| KRH30432 | Soybean | nucleus | 56.75 | 41.78 |
| HORVU3Hr1G079010.5 | Barley | nucleus | 51.52 | 39.2 |
| HORVU1Hr1G073870.2 | Barley | nucleus | 54.27 | 37.67 |
| HORVU2Hr1G116130.4 | Barley | nucleus | 13.77 | 37.59 |
| HORVU0Hr1G032230.4 | Barley | nucleus | 32.51 | 33.62 |
| HORVU0Hr1G015710.1 | Barley | nucleus | 41.6 | 32.83 |
| HORVU5Hr1G053330.5 | Barley | nucleus | 41.6 | 29.96 |
| HORVU5Hr1G073410.1 | Barley | nucleus | 44.63 | 28.57 |
| HORVU2Hr1G116090.2 | Barley | cytosol | 28.37 | 24.35 |
| HORVU3Hr1G084340.10 | Barley | nucleus | 37.19 | 23.73 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | MapMan:15.5.4.7.1 | UniProt:A0A287NKS5 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:HORVU4Hr1G025130 | EnsemblPlants:HORVU4Hr1G025130.10 | InterPro:IPR004827 | InterPro:IPR025422 | PFAM:PF00170 | PFAM:PF14144 |
| ScanProsite:PS00036 | PFscan:PS50217 | PFscan:PS51806 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF257 | SMART:SM00338 |
| SUPFAM:SSF57959 | InterPro:TGA_domain | UniParc:UPI000B483EBE | InterPro:bZIP | SEG:seg | : |
Description
No Description!
Coordinates
chrchr4H:-:145357365..145362051
Molecular Weight (calculated)
40338.9 Da
IEP (calculated)
7.138
GRAVY (calculated)
-0.477
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSDHHHHQ QQQGMAGLVT VAAQFHQISQ QQHHQQQKMA TSSTHSDRTG KALDPKTTRR LAQNREAARK SRLRKKAYIQ QLESGKLKLA QLEQDLQRAR
101: SQGLLVGGAP SGNSSPGAAM FDVEYNRWLD DDSRRMIELR GGLHAHLPDG DLRAIIDDTL THYDELFRLK SAAARADVFH LITGMWATPA ERCFLWMGGF
201: RPSDLLKTLA PQLDPLTEQQ MVGICSLEQS LQQAEEALTQ GLEQLHQSLA VTVAGSGSLS DDTNMGSFMG DMAVALGKLA NLEGFVIQQA DNLRQQTLHQ
301: MHRILTVRQA ARCFLAIGEY HNRLRALSSL WASRPREILM TDEGNCGELS IAAHPSESQY SAF
101: SQGLLVGGAP SGNSSPGAAM FDVEYNRWLD DDSRRMIELR GGLHAHLPDG DLRAIIDDTL THYDELFRLK SAAARADVFH LITGMWATPA ERCFLWMGGF
201: RPSDLLKTLA PQLDPLTEQQ MVGICSLEQS LQQAEEALTQ GLEQLHQSLA VTVAGSGSLS DDTNMGSFMG DMAVALGKLA NLEGFVIQQA DNLRQQTLHQ
301: MHRILTVRQA ARCFLAIGEY HNRLRALSSL WASRPREILM TDEGNCGELS IAAHPSESQY SAF
001: MANHRMSEAT NHNHNHHLPY SLIHGLNNNH PSSGFINQDG SSSFDFGELE EAIVLQGVKY RNEEAKPPLL GGGGGATTLE MFPSWPIRTH QTLPTESSKS
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F
101: GGESSDSGSA NFSGKAESQQ PESPMSSKHH LMLQPHHNNM ANSSSTSGLP STSRTLAPPK PSEDKRKATT SGKQLDAKTL RRLAQNREAA RKSRLRKKAY
201: VQQLESSRIK LSQLEQELQR ARSQGLFMGG CGPPGPNITS GAAIFDMEYG RWLEDDNRHM SEIRTGLQAH LSDNDLRLIV DGYIAHFDEI FRLKAVAAKA
301: DVFHLIIGTW MSPAERCFIW MAGFRPSDLI KILVSQMDLL TEQQLMGIYS LQHSSQQAEE ALSQGLEQLQ QSLIDTLAAS PVIDGMQQMA VALGKISNLE
401: GFIRQADNLR QQTVHQLRRI LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLMSDET SCQTTTDLQI VQSSRNHFSN F
Arabidopsis Description
TGA9Transcription factor TGA9 [Source:UniProtKB/Swiss-Prot;Acc:Q93XM6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.